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(-) Description

Title :  SOLUTION NMR STRUCTURE OF XENOPUS FN14
 
Authors :  M. Pellegrini, L. Willen, M. Perroud, D. Krushinskie, K. Strauch, H. Cu Y. Sun, E. S. Day, P. Schneider, T. S. Zheng
Date :  11 Aug 09  (Deposition) - 29 Jun 11  (Release) - 01 May 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Fn14, Tweak, Tnf Receptor, Crd, Mutagenesis, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Pellegrini, L. Willen, M. Perroud, D. Krushinskie, K. Strauch, H. Cuervo, E. S. Day, P. Schneider, T. S. Zheng
Structure Of The Extracellular Domains Of Human And Xenopus Fn14: Implications In The Evolution Of Tweak And Fn14 Interactions.
Febs J. V. 280 1818 2013
PubMed-ID: 23438059  |  Reference-DOI: 10.1111/FEBS.12206

(-) Compounds

Molecule 1 - FN14
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Taxid: 4922
    Fragment: RESIDUES 23-72
    Gene: FN14, TNFRSF12A
    Organism Common: CLAWED FROG,COMMON PLATANNA,PLATANNA
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KN0)

(-) Sites  (0, 0)

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(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:9 -A:22
2A:25 -A:40
3A:28 -A:37

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KN0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:50
 aligned with Q6SIX7_XENLA | Q6SIX7 from UniProtKB/TrEMBL  Length:120

    Alignment length:50
                                    32        42        52        62        72
          Q6SIX7_XENLA   23 SQGECPEGRAYSQDLGKCMECSVCKNSEKSDFCQNCPSKTEQPDFPWIWV 72
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains stn_TNFRSF12A-2kn0A01 A:5-54                       Pfam domains
         Sec.struct. author ........eeee....eeee.............................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  2kn0 A  5 SQGECPEGRAYSQDLGKCMECSVCKNSEKSDFCQNCPSKTEQPDFPWIWV 54
                                    14        24        34        44        54
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 Classification and Annotation

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: stn_TNFRSF12A] (3)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (Q6SIX7_XENLA | Q6SIX7)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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(-) Related Entries Specified in the PDB File

2kmz HUMAN FN14 SOLUTION NMR STRUCTURE