2KM6 - JenaLib

Title :   NMR STRUCTURE OF THE NLRP7 PYRIN DOMAIN

Authors :   A. Pinheiro, M. Proell, R. Schwarzenbacher, W. Peti

Date :   21 Jul 09 (Deposition) - 09 Jun 10 (Release) - 15 Sep 10 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Nlrp7, Pyrin Domain, Innate Immune System, Nalp, Atp-Binding, Disease Mutation, Leucine-Rich Repeat, Nucleotide-Binding, Immune System, Signaling Protein, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. S. Pinheiro, M. Proell, C. Eibl, R. Page, R. Schwarzenbacher, W. Pet
Three-Dimensional Structure Of The Nlrp7 Pyrin Domain: Insight Into Pyrin-Pyrin-Mediated Effector Domain Signaling In Innate Immunity.
J. Biol. Chem. V. 285 27402 2010
PubMed-ID: 20547486 | Reference-DOI: 10.1074/JBC.M110.113191

Compounds

Molecule 1 - NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 7
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHIS PARALLEL
	Expression System Strain	:	BL21 DE3 STAR
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NLRP7, NALP7, NOD12, PYPAF3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PYRIN-CONTAINING APAF1-LIKE PROTEIN 3, NUCLEOTIDE-BINDING OLIGOMERIZATION DOMAIN PROTEIN 12

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:96
 aligned with NALP7_HUMAN | Q8WX94 from UniProtKB/Swiss-Prot  Length:980

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
           NALP7_HUMAN    1 MTSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEADGKKLAEILVNTSSENWIRNATVNILEEMNLTELCKMAKAEMMEDGQ 96
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -----PYRIN-2km6A01 A:8-91                                                                ------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE DAPIN  PDB: A:3-95 UniProt: 1-93                                                             --- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2km6 A  3 MTSPQLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEADGKKLAEILVNTSSENWIRNATVNILEEMNLTELCKMAKAEMMEDGQ 98
                                    12        22        32        42        52        62        72        82        92

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (2, 2)

NMR Structure(hide GO term definitions)

Chain A (NALP7_HUMAN | Q8WX94)

molecular function
	GO:0005524		ATP binding		Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0000166		nucleotide binding		Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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