2KJR - JenaLib

Title :   SOLUTION NMR STRUCTURE OF THE N-TERMINAL UBIQUITIN-LIKE DOMAIN FROM TUBULIN-BINDING COFACTOR B, CG11242, FROM DROSOPHILA MELANOGASTER. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET FR629A (RESIDUES 8-92)

Authors :   T. A. Ramelot, J. R. Cort, R. Shastry, C. Ciccosanti, M. Jiang, R. Nair, B. Rost, G. Swapna, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, M. A. Kennedy, Northeast Structural Genomics Consortium (Nesg)

Date :   08 Jun 09 (Deposition) - 23 Jun 09 (Release) - 23 Jun 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Ubl, Ubiquitin, Ubiquitin-Like, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Signaling Protein, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. A. Ramelot, J. R. Cort, R. Shastry, C. Ciccosanti, M. Jiang, R. Nair, B. Rost, G. Swapna, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, M. A. Kennedy
Solution Nmr Structure Of The N-Terminal Ubiquitin-Like Domain From Tubulin-Binding Cofactor B, Cg11242, From Drosophila Melanogaster. Northeast Structural Genomics Consortium Target Fr629A (Residues 8-92)
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - CG11242
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3) PMGK
	Expression System Taxid	:	562
	Expression System Vector	:	PET14-15C
	Fragment	:	UBL DOMAIN, RESIDUES 8-92
	Gene	:	CG11242, DMEL_CG11242
	Organism Common	:	FRUIT FLY
	Organism Scientific	:	DROSOPHILA MELANOGASTER
	Organism Taxid	:	7227

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:95
 aligned with A1ZBM2_DROME | A1ZBM2 from UniProtKB/TrEMBL  Length:244

    Alignment length:95
                             2   3                                                                                         
                             |   |   7        17        27        37        47        57        67        77        87     
          A1ZBM2_DROME    1 MS---TIIETGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVDS 92
               SCOP domains d2kjra_ A: automated matches                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeeee.....eeeeeeee...hhhhhhhhhhhhhh.....eeeeeee..eeeee......hhhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  2kjr A  1 MGHHHHHHSHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVDS 95
                                    10        20        30        40        50        60        70        80        90

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

NMR Structure(hide GO term definitions)

Chain A (A1ZBM2_DROME | A1ZBM2)

biological process
	GO:0031122	cytoplasmic microtubule organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell.
	GO:0035089	establishment of apical/basal cell polarity	The specification and formation of the polarity of a cell along its apical/basal axis.
	GO:0007309	oocyte axis specification	The establishment, maintenance and elaboration of an axis in the oocyte. An example of this is found in Drosophila melanogaster.
cellular component
	GO:0005938	cell cortex	The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
	GO:0005813	centrosome	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0072686	mitotic spindle	A spindle that forms as part of mitosis. Mitotic and meiotic spindles contain distinctive complements of proteins associated with microtubules.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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