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(-) Description

Title :  SOLUTION NMR STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION YEGP FROM E. COLI. ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET EC0640_1_123 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET102.
 
Authors :  C. Fares, A. Lemak, A. Gutmanas, M. Karra, A. H. Yee, A. Semesi, C. H. Arro Northeast Structural Genomics Consortium (Nesg), Ontario Cen Structural Proteomics (Ocsp)
Date :  08 Sep 08  (Deposition) - 14 Oct 08  (Release) - 23 May 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Yegp, Protein Structure Initiative (Psi), Northeast Structural Genomics Consortium (Nesg), Ontario Centre For Structural Proteomics (Ocsp), Escherichia Coli, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Fares, A. Lemak, A. Gutmanas, M. Karra, A. Yee, A. Semesi, C. H. Arrowsmith
Solution Structure Of Protein Yegp From Escherichia Coli.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPF0339 PROTEIN YEGP
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P11
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YEGP, B2080, JW5339
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2K8E)

(-) Sites  (0, 0)

(no "Site" information available for 2K8E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2K8E)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2K8E)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:116
 aligned with YEGP_ECOLI | P76402 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:116
                               1                                                                                                          110   
                               |     7        17        27        37        47        57        67        77        87        97       107  |   
           YEGP_ECOLI     - ---MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT---   -
               SCOP domains ---d2k8ea1 A:17-74 Uncharacterized protein YegP              d2k8ea2 A:75-126 Uncharacterized protein YegP       --- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------DUF1508-2k8eA01 A:77-125                         ---- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------DUF1508-2k8eA02 A:77-125                         ---- Pfam domains (2)
         Sec.struct. author ......eeeeee.....eeeeee.....eeee.....hhhhhhhhhhhhhhh......eeeeee...eeeeeee.....eeee.....hhhhhhhhhhhhhhhh....eee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 2k8e A  14 GVIMAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNTGSN 129
                                    23        33        43        53        63        73        83        93       103       113       123
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2K8E)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: no clan defined [family: DUF1508] (2)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  2k8e
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  YEGP_ECOLI | P76402
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 Related Entries

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