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(-) Description

Title :  SOLUTION NMR STRUCTURE OF PROTEIN ENCODED BY GENE BPP1335 FROM BORDETELLA PARAPERTUSSIS: NORTHEAST STRUCTURAL GENOMICS TARGET BPR195
 
Authors :  K. Singarapu, A. Eletsky, B. Sathyamoorthy, D. Sukumaran, D. Wang, M. Jiang, C. Ciccosanti, R. Xiao, J. Liu, M. C. Baran, G. Swapna, T. B. Acton, B. Rost, G. T. Montelione, T. Szyperski, Northeast Structural Genomics Consortium (Nesg)
Date :  27 Jun 08  (Deposition) - 02 Sep 08  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Structural Genomiccs, Protein Structure, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Singarapu, A. Eletsky, B. Sathyamoorthy, D. Sukumaran, D. Wang, M. Jiang, C. Ciccosanti, R. Xiao, J. Liu, M. C. Baran, G. Swapna, T. B. Acton, B. Rost, G. T. Montelione, T. Szyperski
Solution Nmr Structure Of Protein Encoded By Gene Bpp1335 From Bordetella Parapertussis: Northeast Structural Genomics Target Bpr195
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21-23C
    Expression System Vector Type: PLASMID
    Gene: BPP1335
    Organism Scientific: BORDETELLA PARAPERTUSSIS
    Organism Taxid: 519

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2K5G)

(-) Sites  (0, 0)

(no "Site" information available for 2K5G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2K5G)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Pro A:97 -Pro A:98

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2K5G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2K5G)

(-) Exons   (0, 0)

(no "Exon" information available for 2K5G)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:191
 aligned with Q7WAN9_BORPA | Q7WAN9 from UniProtKB/TrEMBL  Length:183

    Alignment length:191
                                                                                                                                                                                                                183        
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  |      - 
         Q7WAN9_BORPA     1 MTSPSSAFPDGHGARLDAQSIRFERLLPGPIERVWAWLADADKRARWLAGGELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTLLRCEPPRVLALTWGGGAGEAPSEVLFELSEAGEQVRLVLTHTRLADRAAMLDVAGGWHAHLAVLAGKLAGQAPPPFWTTLAQAEQDYEQRL--------   -
               SCOP domains d2k5ga1 A:1-183 Uncharacterized protein BPP1335                                                                                                                                        -------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------AHSA1-2k5gA01 A:28-161                                                                                                                ------------------------------ Pfam domains
         Sec.struct. author ....................eeeeeee...hhhhhhhhhhhhhhh..............eeeeeehhhhh.........hhhhh.eeeeeeeeeee...eeeee..........eeeeeeee....eeeeeeee...hhhhhhhhh....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2k5g A   1 MTSPSSAFPDGHGARLDAQSIRFERLLPGPIERVWAWLADADKRARWLAGGELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTLLRCEPPRVLALTWGGGAGEAPSEVLFELSEAGEQVRLVLTHTRLADRAAMLDVAGGWHAHLAVLAGKLAGQAPPPFWTTLAQAEQDYEQRLLEHHHHHH 191
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2K5G)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Bet_V_1_like (93)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q7WAN9_BORPA | Q7WAN9)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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    Pro A:97 - Pro A:98   [ RasMol ]  
 

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