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(-) Description

Title :  STRUCTURE OF UNCHARACTERIZED PROTEIN MJ1198 FROM METHANOCALDOCOCCUS JANNASCHII. NORTHEAST STRUCTURAL GENOMICS TARGET MJR117B
 
Authors :  P. Rossi, M. Maglaqui, E. L. Foote, K. Hamilton, C. Ciccosanti, R. Xiao, R. Nair, G. Swapna, J. K. Everett, T. B. Acton, B. Rost, G. T. Montelione Northeast Structural Genomics Consortium (Nesg)
Date :  24 Jun 08  (Deposition) - 15 Jul 08  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Uncharacterized Protein, Metal-Binding, Zinc, Zinc-Finger, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Rossi, R. Xiao, T. B. Acton, G. T. Montelione
Structure Of Uncharacterized Protein Mj1198 From Methanocaldococcus Jannaschii. Northeast Structural Genomics Target Mjr117B
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN MJ1198
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Vector Type: PLASMID
    Gene: MJ1198
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190
    Other Details: EXPRESSION MEDIA: MJ9 100%N15 5%C13 MJ9 100%N15 100%C13

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2K52)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1S1PS50126 S1 domain profile.Y1198_METJA135-200  1A:6-71

(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:74
 aligned with Y1198_METJA | Q58598 from UniProtKB/Swiss-Prot  Length:761

    Alignment length:74
                                   139       149       159       169       179       189       199    
          Y1198_METJA   130 YDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIPLT 203
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -S1-2k52A01 A:2-71                                                     --- Pfam domains
         Sec.struct. author .......eeeeeeeeee..eeeeeee..eeeee.hhhh...hhhhh....eeeeeeeee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----S1  PDB: A:6-71 UniProt: 135-200                                  --- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 2k52 A   1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIPLE  74
                                    10        20        30        40        50        60        70
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: OB (224)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (Y1198_METJA | Q58598)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0031072    heat shock protein binding    Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
cellular component
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0032040    small-subunit processome    A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.

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