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(-) Description

Title :  SOLUTION NMR STRUCTURE OF UPF0339 PROTEIN SO3888 FROM SHEWANELLA ONEIDENSIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SOR190
 
Authors :  Y. Tang, D. Wang, C. Nwosu, M. Maglaqui, R. Xiao, J. Liu, M. C. Baran, G. V. T. B. Acton, B. Rost, G. T. Montelione, Northeast Structural Genomi Consortium (Nesg)
Date :  31 May 08  (Deposition) - 08 Jul 08  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Solution Nmr Structure, Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Tang, D. Wang, C. Nwosu, M. Maglaqui, R. Xiao, J. Liu, M. C. Baran, G. V. T. Swapna, T. B. Acton, B. Rost, G. T. Montelione
Solution Nmr Structure Of Upf0339 Protein So3888 From Shewanella Oneidensis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UPF0339 PROTEIN SO_3888
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SOR190-21.2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SO_3888
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 211586
    Strain: MR-1

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2K49)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
 aligned with Y3888_SHEON | Q8EAL4 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:118
                                                                                                                                       110        
                                    10        20        30        40        50        60        70        80        90       100       110        
          Y3888_SHEON     1 MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLT--------   -
               SCOP domains d2k49a2 A:1-58 Uncharacterized protein SO3888             d2k49a1 A:59-110 Uncharacterized protein SO3888     -------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------DUF1508-2k49A01 A:61-109                         --------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------DUF1508-2k49A02 A:61-109                         --------- Pfam domains (2)
         Sec.struct. author ...eeeeee.....eeeeee.....eeee.....hhhhhhhhhhhhhhhh.hhh.eeeeee...eeeeeee.....eeee.....hhhhhhhhhhhhhhhh....eee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2k49 A   1 MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLTLEHHHHHH 118
                                    10        20        30        40        50        60        70        80        90       100       110
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2K49)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: no clan defined [family: DUF1508] (2)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (Y3888_SHEON | Q8EAL4)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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