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(-) Description

Title :  STRUCTURE ENSEMBLE BACKBONE AND SIDE-CHAIN 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS, 1H-15N RDCS AND 1H-1H NOE RESTRAINTS FOR PROTEIN K7 FROM THE VACCINIA VIRUS
 
Authors :  A. P. Kalverda, G. S. Thompson, A. Vogel, M. Schr Der, A. G. Bowie, A. R. Khan, S. W. Homans
Date :  22 Apr 08  (Deposition) - 28 Oct 08  (Release) - 09 Jun 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
Keywords :  Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kalverda, G. S. Thompson, A. Vogel, M. Schroder, A. G. Bowie, A. R. Khan, S. W. Homans
Poxvirus K7 Protein Adopts A Bcl-2 Fold: Biochemical Mapping Of Its Interactions With Human Dead Box Rna Helicase Ddx3.
J. Mol. Biol. V. 385 843 2009
PubMed-ID: 18845156  |  Reference-DOI: 10.1016/J.JMB.2008.09.048
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN K7
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Vector: PET15
    Expression System Vector Type: PLASMID
    Gene: K7R
    Organism Common: VACV
    Organism Scientific: VACCINIA VIRUS
    Other Details: THE PET15 VECTOR WAS MODIFIED TO REPLACE THE THROMBIN CLEAVAGE SITE WITH AN RTEV CLEAVAGE SITE
    Strain: WR WESTERN RESERVE / WR

 Structural Features

(-) Chains, Units

  
NMR Structure (15x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2K36)

(-) Sites  (0, 0)

(no "Site" information available for 2K36)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2K36)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2K36)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2K36)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2K36)

(-) Exons   (0, 0)

(no "Exon" information available for 2K36)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with K7_VACCW | P68466 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
             K7_VACCW     1 MATKLDYEDAVFYFVDDDKICSRDSIIDLIDEYITWRNHVIVFNKDITSCGRLYKELMKFDDVAIRYYGIDKINEIVEAMSEGDHYINFTKVHDQESLFATIGICAKITEHWGYKKISESRFQSLGNITDLMTDDNINILILFLEKKLN 149
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2k36 A   1 MATKLDYEDAVFYFVDDDKICSRDSIIDLIDEYITWRNHVIVFNKDITSCGRLYKELMKFDDVAIRYYGIDKINEIVEAMSEGDHYINFTKVHDQESLFATIGICAKITEHWGYKKISESRFQSLGNITDLMTDDNINILILFLEKKLN 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2K36)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2K36)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2K36)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (K7_VACCW | P68466)
biological process
    GO:0030683    evasion or tolerance by virus of host immune response    Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0039644    suppression by virus of host NF-kappaB transcription factor activity    Any process in which a virus stops, prevents, or reduces the activity of host NF-kappaB activity.
    GO:0039503    suppression by virus of host innate immune response    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        K7_VACCW | P68466: 3jrv

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