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(-) Description

Title :  SOLUTION STRUCTURE OF AN N-GLYCOSYLATED PROTEIN USING IN VITRO GLYCOSYLATION
 
Authors :  V. Slynko, M. Schubert, S. Numao, M. Kowarik, M. Aebi, F. H. -T. Allain
Date :  18 Apr 08  (Deposition) - 03 Feb 09  (Release) - 03 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Glycoprotein, N-Glycan, Glycosylation, Membrane Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Slynko, M. Schubert, S. Numao, M. Kowarik, M. Aebi, F. H. Allain
Nmr Structure Determination Of A Segmentally Labeled Glycoprotein Using In Vitro Glycosylation.
J. Am. Chem. Soc. V. 131 1274 2009
PubMed-ID: 19154179  |  Reference-DOI: 10.1021/JA808682V
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ACRA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE)
    Expression System Vector: PET24B
    Gene: CMEA
    Organism Scientific: CAMPYLOBACTER JEJUNI

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

NMR Structure (3, 7)
No.NameCountTypeFull Name
1A2G5Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2B6D1Ligand/Ion2,4-BIS(ACETYLAMINO)-2,4,6-TRIDEOXY-BETA-D-GLUCOPYRANOSE
3BGC1Ligand/IonBETA-D-GLUCOSE

(-) Sites  (7, 7)

NMR Structure (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:38 , LYS A:39 , ASP A:40 , ASN A:42 , SER A:44 , TYR A:58 , ALA A:63 , ASP A:66 , A2G A:118BINDING SITE FOR RESIDUE B6D A 117
2AC2SOFTWARELYS A:39 , PHE A:48 , B6D A:117 , A2G A:119BINDING SITE FOR RESIDUE A2G A 118
3AC3SOFTWAREA2G A:118 , A2G A:120BINDING SITE FOR RESIDUE A2G A 119
4AC4SOFTWAREA2G A:119 , A2G A:121 , BGC A:123BINDING SITE FOR RESIDUE A2G A 120
5AC6SOFTWAREA2G A:120 , A2G A:122 , BGC A:123BINDING SITE FOR RESIDUE A2G A 121
6AC7SOFTWAREA2G A:121BINDING SITE FOR RESIDUE A2G A 122
7AC8SOFTWAREA2G A:120 , A2G A:121BINDING SITE FOR RESIDUE BGC A 123

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2K33)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2K33)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2K33)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2K33)

(-) Exons   (0, 0)

(no "Exon" information available for 2K33)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
 aligned with Q8RTE5_CAMJU | Q8RTE5 from UniProtKB/TrEMBL  Length:367

    Alignment length:180
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
         Q8RTE5_CAMJU    61 DVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVDSAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQLANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDKLNLVRNTQSGKWDLDSIHANLN 240
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.....eeeee.......ee....eeeeee..---------------------.............................---------------------..eeeee....eee.........ee.......eeee........-----------------.-----....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2k33 A   1 DVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD---------------------QASKDFNRSKALFSQSAISQKEYDSSLAT---------------------LDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYAD-----------------G-----SHHHHHH 116
                                    10        20        30    |    -         -      | 39        49        59    |    -         -      | 68        78        88        98       108         -       | -   |   116
                                                             35                    36                          64                    65                                        108               109   110
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2K33)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2K33)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2K33)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (Q8RTE5_CAMJU | Q8RTE5)
biological process
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  2k33
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8RTE5_CAMJU | Q8RTE5: 2k32

(-) Related Entries Specified in the PDB File

2k32 NONGLYCOSYLATED FORM RELATED ID: 15737 RELATED DB: BMRB