2K2C - JenaLib

Title :   SOLUTION NMR STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PIRH2. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HT2A

Authors :   B. Wu, A. Lemak, Y. Sheng, M. Karra, S. Srisailam, M. Sunnerhagen, C. H. Arrowsmith, Northeast Structural Genomics Consortium (Nesg)

Date :   31 Mar 08 (Deposition) - 15 Apr 08 (Release) - 28 Apr 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (15x)

Keywords :   Zinc-Binding Protein, Cytoplasm, Metal-Binding, Nucleus, Zinc-Finger, Metal Binding Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Sheng, R. C. Laister, A. Lemak, B. Wu, E. Tai, S. Duan, J. Lukin, M. Sunnerhagen, S. Srisailam, M. Karra, S. Benchimol, C. H. Arrowsmith
Molecular Basis Of Pirh2-Mediated P53 Ubiquitylation.
Nat. Struct. Mol. Biol. V. 15 1334 2008
PubMed-ID: 19043414 | Reference-DOI: 10.1038/NSMB.1521
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (5, 5)

NMR Structure (5, 5)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000324439	1b	ENSE00002044590	chr4:76439895-76439407	489	ZN363_HUMAN	1-30	30	1	A:1-30	30
1.2b	ENST00000324439	2b	ENSE00001720950	chr4:76434506-76434387	120	ZN363_HUMAN	31-70	40	1	A:31-70	40
1.3b	ENST00000324439	3b	ENSE00001615955	chr4:76434145-76434030	116	ZN363_HUMAN	71-109	39	1	A:71-109	39
1.4b	ENST00000324439	4b	ENSE00001706744	chr4:76419389-76419311	79	ZN363_HUMAN	109-135	27	1	A:109-135	27
1.5b	ENST00000324439	5b	ENSE00001285948	chr4:76417143-76417099	45	ZN363_HUMAN	136-150	15	1	A:136-137	2
1.6a	ENST00000324439	6a	ENSE00001077848	chr4:76416992-76416934	59	ZN363_HUMAN	151-170	20	0	-	-
1.6c	ENST00000324439	6c	ENSE00001077852	chr4:76416847-76416821	27	ZN363_HUMAN	170-179	10	0	-	-
1.6g	ENST00000324439	6g	ENSE00001077845	chr4:76415911-76415791	121	ZN363_HUMAN	179-219	41	0	-	-
1.7j	ENST00000324439	7j	ENSE00001946767	chr4:76407876-76404247	3630	ZN363_HUMAN	220-261	42	0	-	-

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:137
 aligned with ZN363_HUMAN | Q96PM5 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       
          ZN363_HUMAN     1 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCI 137
               SCOP domains d2k2ca1 A:1-82 automated matches                                                  d2k2ca2 A:83-137 automated matches                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------zf-CHY-2k2cA01 A:20-94                                                     ------------------------------------------- Pfam domains
         Sec.struct. author ..........................eeee......ee.hhhhhhhhh..........eeee.....eee..............eee....eee.....eee....eee......eeee....eeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------ZF_CHY  PDB: A:14-80 UniProt: 13-80                                 -ZF_CTCHY  PDB: A:82-137 UniProt: 82-144                  PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: A:1-30        Exon 1.2b  PDB: A:31-70 UniProt: 31-70  Exon 1.3b  PDB: A:71-109               --------------------------1. Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------Exon 1.4b  PDB: A:109-135  -- Transcript 1 (2)
                 2k2c A   1 MAATAREDGATGEERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCI 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (19, 19)

NMR Structure(hide GO term definitions)

Chain A (ZN363_HUMAN | Q96PM5)

molecular function
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0002039	p53 binding	Interacting selectively and non-covalently with one of the p53 family of proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
	GO:0004842	ubiquitin-protein transferase activity	Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0070987	error-free translesion synthesis	The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across the lesion. This process does not remove the replication-blocking lesions but does not causes an increase in the endogenous mutation level. For S. cerevisiae, RAD30 encodes DNA polymerase eta, which incorporates two adenines. When incorporated across a thymine-thymine dimer, it does not increase the endogenous mutation level.
	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
	GO:0031398	positive regulation of protein ubiquitination	Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin groups to a protein.
	GO:0051865	protein autoubiquitination	The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink.
	GO:0016567	protein ubiquitination	The process in which one or more ubiquitin groups are added to a protein.
	GO:0042787	protein ubiquitination involved in ubiquitin-dependent protein catabolic process	The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0016607	nuclear speck	A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0000151	ubiquitin ligase complex	A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.

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	2k2c
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