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(-) Description

Title :  SOLUTION NMR STRUCTURE OF SELENIUM-BINDING PROTEIN FROM METHANOCOCCUS VANNIELII
 
Authors :  M. Suzuki, T. C. Stadtman, N. Tjandra
Date :  28 Dec 07  (Deposition) - 22 Jul 08  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C,D,E  (10x)
Keywords :  Selenium, Selenium-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Suzuki, D. Y. Lee, N. Inyamah, T. C. Stadtman, N. Tjandra
Solution Nmr Structure Of Selenium-Binding Protein From Methanococcus Vannielii.
J. Biol. Chem. V. 283 25936 2008
PubMed-ID: 18650445  |  Reference-DOI: 10.1074/JBC.M803773200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SELENIUM BINDING PROTEIN
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SBP
    Organism Scientific: METHANOCOCCUS VANNIELII
    Organism Taxid: 2187

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JZ7)

(-) Sites  (0, 0)

(no "Site" information available for 2JZ7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JZ7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JZ7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JZ7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JZ7)

(-) Exons   (0, 0)

(no "Exon" information available for 2JZ7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:81
 aligned with Q5UBU1_METVA | Q5UBU1 from UniProtKB/TrEMBL  Length:81

    Alignment length:81
                                    10        20        30        40        50        60        70        80 
          Q5UBU1_METVA    1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..........eeeeee.....hhhhhhhhhhhhhhhh...eee..............eeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2jz7 A  1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
                                    10        20        30        40        50        60        70        80 


Chain B from PDB  Type:PROTEIN  Length:81
 aligned with Q5UBU1_METVA | Q5UBU1 from UniProtKB/TrEMBL  Length:81

    Alignment length:81
                                    10        20        30        40        50        60        70        80 
          Q5UBU1_METVA    1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..........eeeeeeee...hhhhhhhhhhhhhhhh...eee............eeeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2jz7 B  1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
                                    10        20        30        40        50        60        70        80 


Chain C from PDB  Type:PROTEIN  Length:81
 aligned with Q5UBU1_METVA | Q5UBU1 from UniProtKB/TrEMBL  Length:81

    Alignment length:81
                                    10        20        30        40        50        60        70        80 
          Q5UBU1_METVA    1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..........eeeeeeee...hhhhhhhhhhhhhhhhh..eee............eeeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2jz7 C  1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
                                    10        20        30        40        50        60        70        80 


Chain D from PDB  Type:PROTEIN  Length:81
 aligned with Q5UBU1_METVA | Q5UBU1 from UniProtKB/TrEMBL  Length:81

    Alignment length:81
                                    10        20        30        40        50        60        70        80 
          Q5UBU1_METVA    1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee...........eeeeee.....hhhhhhhhhhhhhhhhh..eee..............eeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2jz7 D  1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
                                    10        20        30        40        50        60        70        80 


Chain E from PDB  Type:PROTEIN  Length:81
 aligned with Q5UBU1_METVA | Q5UBU1 from UniProtKB/TrEMBL  Length:81

    Alignment length:81
                                    10        20        30        40        50        60        70        80 
          Q5UBU1_METVA    1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) SeleniumBinding-2jz7E01 E:1-81                                                    Pfam domains (1)
           Pfam domains (2) SeleniumBinding-2jz7E02 E:1-81                                                    Pfam domains (2)
           Pfam domains (3) SeleniumBinding-2jz7E03 E:1-81                                                    Pfam domains (3)
           Pfam domains (4) SeleniumBinding-2jz7E04 E:1-81                                                    Pfam domains (4)
           Pfam domains (5) SeleniumBinding-2jz7E05 E:1-81                                                    Pfam domains (5)
         Sec.struct. author .......eee..........eeeeee.....hhhhhhhhhhhhhhhh...eee..............eeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2jz7 E  1 MIFEDKFIITTADEIPGLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCADGKFLGYGTIVKADEAQFTMA 81
                                    10        20        30        40        50        60        70        80
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2JZ7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JZ7)

(-) Pfam Domains  (1, 5)

NMR Structure
(-)
Clan: YbjQ-like (3)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2JZ7)

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