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(-) Description

Title :  SOLUTION NMR STRUCTURE OF UNCHARACTERIZED LIPOPROTEIN YAJI FROM ESCHERICHIA COLI. NORTHEAST STRUCTURAL GENOMICS TARGET ER540
 
Authors :  G. Liu, R. Xiao, C. Chen, J. Liu, M. C. Baran, G. Swapna, T. B. Acton, B. Ros G. T. Montelione, Northeast Structural Genomics Consortium (Ne
Date :  31 Oct 07  (Deposition) - 20 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Lipoprotein, Yaji, Structural Genomics, Gft Nmr, Northeast Structural Genomics Consortium, Nesg, Membrane, Palmitate, Psi-2, Protein Structure Initiative (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Liu, R. Xiao, G. Swapna, T. B. Acton, G. T. Montelione
Solution Nmr Structure Of Uncharacterized Lipoprotein Yaji From Escherichia Coli.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED LIPOPROTEIN YAJI
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YAJI, B0412, JW5056
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JWY)

(-) Sites  (0, 0)

(no "Site" information available for 2JWY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JWY)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ala A:129 -Pro A:130

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JWY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JWY)

(-) Exons   (0, 0)

(no "Exon" information available for 2JWY)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:168
 aligned with YAJI_ECOLI | P46122 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:168
                                                                                                                                                                                         179        
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179        
           YAJI_ECOLI    20 CVQQSEVRQMKHSVSTLNQEMTQLNQETVKITQQNRLNAKSSSGVYLLPGAKTPARLESQIGTLRMSLVNITPDADGTTLTLRIQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKGISVDQLGFVRIHDIQPVMQ--------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -----------------------2jwyA01 A:24-158 lipoprotein yaji like domain                                                                                          ---------- CATH domains
               Pfam domains -DUF3251-2jwyA01 A:2-160                                                                                                                                        -------- Pfam domains
         Sec.struct. author ........................hhhhhhhhhhhhhhhhh...eee.......eeee....eeeeeeeeeee....eeeeeeeee........eeeeeeeeee........eeeeeeeeeee........eeeeeeee...hhhhh.eeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jwy A   1 MVQQSEVRQMKHSVSTLNQEMTQLNQETVKITQQNRLNAKSSSGVYLLPGAKTPARLESQIGTLRMSLVNITPDADGTTLTLRIQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKGISVDQLGFVRIHDIQPVMQLEHHHHHH 168
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2JWY)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: DUF3251] (1)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (YAJI_ECOLI | P46122)
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  Cis Peptide Bonds
    Ala A:129 - Pro A:130   [ RasMol ]  
 

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  2jwy
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  YAJI_ECOLI | P46122
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