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Title :   SOLUTION NMR STRUCTURE OF RIBOSOME MODULATION FACTOR VP1593 FROM VIBRIO PARAHAEMOLYTICUS. NORTHEAST STRUCTURAL GENOMICS TARGET VPR55

Authors :   Y. Tang, P. Rossi, G. Swapna, H. Wang, M. Jiang, K. Cunningham, L. Owens, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, Nort Structural Genomics Consortium (Nesg)

Date :   27 Jun 07 (Deposition) - 17 Jul 07 (Release) - 13 Jul 11 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Solution Nmr Structure, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Tang, P. Rossi, G. Swapna, H. Wang, M. Jiang, K. Cunningham, L. Owens L. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione
Solution Nmr Structure Of Ribosome Modulation Factor Vp1593 From Vibrio Parahaemolyticus.
To Be Published
PubMed: search

Compounds

Molecule 1 - RIBOSOME MODULATION FACTOR
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	VPR55-21.4
	Expression System Strain	:	BL21(DE3)+MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	VP1593
	Organism Scientific	:	VIBRIO PARAHAEMOLYTICUS
	Organism Taxid	:	223926
	Other Details	:	THE PROTEIN IS A MONOMER BY GEL FILTRATION CHROMATOGRAPHY AND STATIC LIGHT SCATTERING.
	Strain	:	RIMD 2210633

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:60
 aligned with Q87PC4_VIBPA | Q87PC4 from UniProtKB/TrEMBL  Length:57

    Alignment length:60
                                                                                   57   
                                    10        20        30        40        50      |  -
          Q87PC4_VIBPA    1 MKRQKRDRLERAQSQGYKAGLNGRSQEACPYQQVDARSYWLGGWRDARDEKQSGLYK---  -
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains 2jrmA00 A:1-60 ribosome modulation factor like domain        CATH domains
               Pfam domains RMF-2jrmA01 A:1-55                                     ----- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                  2jrm A  1 MKRQKRDRLERAQSQGYKAGLNGRSQEACPYQQVDARSYWLGGWRDARDEKQSGLYKLEH 60
                                    10        20        30        40        50        60

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (1, 1)

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Gene Ontology (2, 2)

NMR Structure(hide GO term definitions)

Chain A (Q87PC4_VIBPA | Q87PC4)

biological process
	GO:0006417	regulation of translation	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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