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(-) Description

Title :  SOLUTION STRUCTURE OF MANDUCA SEXTA MORICIN
 
Authors :  Y. Gong, H. Dai, S. Rayaprolu, R. Huang, O. Prakash, H. Jiang
Date :  21 Jun 07  (Deposition) - 25 Mar 08  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Antimicrobial Peptide, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Dai, S. Rayaprolu, Y. Gong, R. Huang, O. Prakash, H. Jiang
Solution Structure, Antibacterial Activity, And Expression Profile Of Manduca Sexta Moricin.
J. Pept. Sci. V. 14 855 2008
PubMed-ID: 18265434  |  Reference-DOI: 10.1002/PSC.1016
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTIMICROBIAL PEPTIDE MORICIN
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:42
 aligned with Q86MA1_MANSE | Q86MA1 from UniProtKB/TrEMBL  Length:67

    Alignment length:42
                                    35        45        55        65  
          Q86MA1_MANSE   26 GKIPVKAIKQAGKVIGKGLRAINIAGTTHDVVSFFRPKKKKH 67
               SCOP domains -d2jr8a1 A:2-41 Moricin                  - SCOP domains
               CATH domains 2jr8A00 A:1-42 Single helix bin            CATH domains
               Pfam domains Moricin-2jr8A01 A:1-41                   - Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                  2jr8 A  1 GKIPVKAIKQAGKVIGKGLRAINIAGTTHDVVSFFRPKKKKH 42
                                    10        20        30        40
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: Moricin] (3)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (Q86MA1_MANSE | Q86MA1)
biological process
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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