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(-) Description

Title :  SOLUTION STRUCTURE AND RESONANCE ASSIGNMENT OF THE N-TERMINAL EVH1 DOMAIN FROM THE HUMAN SPRED2 PROTEIN (SPROUTY-RELATED PROTEIN WITH EVH1 DOMAIN ISOFORM 2)
 
Authors :  M. Fossi, J. Zimmermann, T. Jarchau, A. Lemak, U. Walter, J. Wiegelt, M. Sundstrom, C. Arrowsmith, A. Edwards, H. Oschkinat, L. J. Ball, Structural Genomics Consortium (Sgc)
Date :  18 Apr 07  (Deposition) - 15 May 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Evh1 Domain, Solution Structure, Structural Genomics, Structural Genomics Consortium, Sgc, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Zimmermann, T. Jarchau, U. Walter, H. Oschkinat, L. J. Ball
1H, 13C And 15N Resonance Assignment Of The Human Spred2 Evh1 Domain
J. Biomol. Nmr V. 29 435 2004
PubMed-ID: 15213456  |  Reference-DOI: 10.1023/B:JNMR.0000032526.17586.8C
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN 2
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainB
    Expression System Taxid562
    Expression System VariantBL21 (DE3)
    Expression System VectorPGEX-4T-2
    Expression System Vector TypeVECTOR
    FragmentEVH1/WH1 DOMAIN, SEQUENCE DATABASE RESIDUES 1- 124
    GeneSPRED2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSPRED-2

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JP2)

(-) Sites  (0, 0)

(no "Site" information available for 2JP2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JP2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JP2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JP2)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WH1PS50229 WH1 domain profile.SPRE2_HUMAN5-122  1A:7-124

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003563882aENSE00001656347chr2:65659311-65659096216SPRE2_HUMAN1-991A:3-119
1.5aENST000003563885aENSE00001326475chr2:65572030-65571853178SPRE2_HUMAN9-68601A:11-7060
1.7bENST000003563887bENSE00001156374chr2:65561907-65561739169SPRE2_HUMAN69-125571A:71-12656
1.10ENST0000035638810ENSE00001156368chr2:65559185-6555912165SPRE2_HUMAN125-146220--
1.11ENST0000035638811ENSE00001156363chr2:65544017-65543868150SPRE2_HUMAN147-196500--
1.12dENST0000035638812dENSE00001819105chr2:65541303-655379853319SPRE2_HUMAN197-4182220--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:126
 aligned with SPRE2_HUMAN | Q7Z698 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:126
                              1                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118      
          SPRE2_HUMAN     - --MTEETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIE 124
               SCOP domains d2jp2a_ A: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains --------WH1-2jp2A01 A:9-121                                                                                              ----- Pfam domains
         Sec.struct. author .............eeeeeeeeeeee.......ee......eeeeee............eeeeeee.....eeeeeee.....eeeee..eeeee....eeeeee.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------WH1  PDB: A:7-124 UniProt: 5-122                                                                                      -- PROSITE
           Transcript 1 (1) --Exon 1.2a-----------------------------------------------------------Exon 1.7b  PDB: A:71-126 UniProt: 69-125 [INCOMPLETE]    Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.5a  PDB: A:11-70 UniProt: 9-68                       -------------------------------------------------------- Transcript 1 (2)
                 2jp2 A   1 GSMTEETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIE 126
                                    10        20        30        40        50        60        70        80        90       100       110       120      

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JP2)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: PH (111)

(-) Gene Ontology  (17, 17)

NMR Structure(hide GO term definitions)
Chain A   (SPRE2_HUMAN | Q7Z698)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0030291    protein serine/threonine kinase inhibitor activity    Stops, prevents or reduces the activity of a protein serine/threonine kinase.
    GO:0005173    stem cell factor receptor binding    Interacting selectively and non-covalently with the stem cell factor receptor (SCFR), a type III transmembrane kinase receptor.
biological process
    GO:0008543    fibroblast growth factor receptor signaling pathway    The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands.
    GO:0000188    inactivation of MAPK activity    Any process that terminates the activity of the active enzyme MAP kinase.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0010801    negative regulation of peptidyl-threonine phosphorylation    Any process that decreases the frequency, rate or extent of peptidyl-threonine phosphorylation. Peptidyl-threonine phosphorylation is the phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine.
    GO:0043517    positive regulation of DNA damage response, signal transduction by p53 class mediator    Any process that activates, maintains or increases the rate of the cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage.
    GO:0090311    regulation of protein deacetylation    Any process that modulates the rate, frequency, or extent of protein deacetylation, the removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.
    GO:0009966    regulation of signal transduction    Any process that modulates the frequency, rate or extent of signal transduction.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0030658    transport vesicle membrane    The lipid bilayer surrounding a transport vesicle.

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(-) Related Entries Specified in the PDB File

5939 RESONANCE ASSIGNMENTS OF EVH1 DOMAIN FROM HUMAN SPRED2