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(-) Description

Authors :  T. J. Lowery, J. G. Pelton, D. E. Wemmer, Berkeley Structural Genomics Center (Bsgc)
Date :  27 Nov 06  (Deposition) - 17 Jul 07  (Release) - 24 Feb 09  (Revision)
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  N-Terminal, Domain, Protein, Structural Genomics, Psi, Protein Structure Initiative, Berkeley Structural Genomics Center, Bsgc, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  T. J. Lowery, J. G. Pelton, J. M. Chandonia, R. Kim, H. Yokota, D. E. Wemmer
Nmr Structure Of The N-Terminal Domain Of The Replication Initiator Protein Dnaa.
J. Struct. Funct. Genom. V. 8 11 2007
PubMed-ID: 17680349  |  Reference-DOI: 10.1007/S10969-007-9022-7
(for further references see the PDB file header)

(-) Compounds

    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System VectorLIC(PB3)
    Organism ScientificMYCOPLASMA GENITALIUM
    Organism Taxid2097

 Structural Features

(-) Chains, Units

NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:100
 aligned with DNAA_MYCGE | P35888 from UniProtKB/Swiss-Prot  Length:437

    Alignment length:100
                                    10        20        30        40        50        60        70        80        90       100
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2jmpA01 A:1-87  [code=3.30.300.20, no name defined]                                    ------------- CATH domains
               Pfam domains DnaA_N-2jmpA01 A:1-76                                                       ------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhh......eee...eeeee..hhhhhhhhhhh..hhhhhh.......eeeeehhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                                    10        20        30        40        50        60        70        80        90       100

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (1, 1)

NMR Structure
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
Clan: DnaA_N (1)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (DNAA_MYCGE | P35888)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003688    DNA replication origin binding    Interacting selectively and non-covalently with the DNA replication origin, a unique DNA sequence of a replicon at which DNA replication is initiated and proceeds bidirectionally or unidirectionally.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006270    DNA replication initiation    The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action.
    GO:0006275    regulation of DNA replication    Any process that modulates the frequency, rate or extent of DNA replication.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.


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