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(-) Description

Title :  THE CRYSTAL STRUCTURE OF DR2241 FROM DEINOCOCCUS RADIODURANS AT 1.9 A RESOLUTION REVEALS A MULTI-DOMAIN PROTEIN WITH STRUCTURAL SIMILARITY TO CHELATASES BUT ALSO WITH TWO ADDITIONAL NOVEL DOMAINS
 
Authors :  H. -K. S. Leiros, S. M. Mcsweeney
Date :  20 Feb 07  (Deposition) - 19 Jun 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Cbix, Sad Phasing, Ribosomal Protein, Structural Genomics, Chelatase Super-Family Fold, 4Fe-4S Iron-Sulphur Cluster (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. -K. S. Leiros, S. M. Mcsweeney
The Crystal Structure Of Dr2241 From Deinococcus Radiodurans At 1. 9 A Resolution Reveals A Multi- Domain Protein With Structural Similarity To Chelatases But Also With Two Additional Novel Domains
J. Struct. Biol. V. 159 92 2007
PubMed-ID: 17448684  |  Reference-DOI: 10.1016/J.JSB.2007.02.009

(-) Compounds

Molecule 1 - RIBOSOMAL PROTEIN S2-RELATED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1SF44Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SF42Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:346 , CYS A:420 , CYS A:423 , CYS A:448 , CYS A:452 , LEU A:455BINDING SITE FOR RESIDUE SF4 A 650
2AC2SOFTWARETRP B:346 , CYS B:420 , CYS B:423 , CYS B:448 , CYS B:452BINDING SITE FOR RESIDUE SF4 B 650
3AC3SOFTWARETRP C:346 , CYS C:420 , CYS C:423 , CYS C:448 , CYS C:452BINDING SITE FOR RESIDUE SF4 C 650
4AC4SOFTWARETRP D:346 , CYS D:420 , CYS D:423 , CYS D:448 , CYS D:452BINDING SITE FOR RESIDUE SF4 D 650

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JH3)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Glu A:50 -Pro A:51
2Glu B:50 -Pro B:51
3Glu C:50 -Pro C:51
4Glu D:50 -Pro D:51

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JH3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JH3)

(-) Exons   (0, 0)

(no "Exon" information available for 2JH3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:459
 aligned with Q9RS86_DEIRA | Q9RS86 from UniProtKB/TrEMBL  Length:472

    Alignment length:468
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458        
         Q9RS86_DEIRA     - --MRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTVAYSDVTVVPVFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVLESREALTPESHAASAVPLSEWPSRVEAGQAVLVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAAEGREDERGGDIDQAHAEAWAALRHLAERGGRLGEVLLTPYGGLFELRHTLDEGRATLDLQTVVTPEGLRDLTARDEAGRWRPIRTWRTLPRGWRAVLSPADLRLGLELLYPAVIEESYAHEHRRLHWTPWMSTARRQTGTLARVQRATPDQVDTVAAQVCASCLRTRLWAGHTLGQTIFSGVPGGLPCAEACTVLLAAVRDEVGRE 466
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......hhhhhhhhhhhhhhhhhhhh......eeeeee........hhhhhh...eeeeee.....hhhhhhhhhhhhh...........eeeee..eeeee..hhhhhhhhhhhhhhhhhhhh....hhhh.eeeeee....hhhhhhhhhhhhhhh...eeeeee....---------..ee.hhhhhhh....eeeee.....hhhhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhheee..eeeeee..eeeeee.hhh..hhhhheee.hhhhhhhhh....................eeeeehhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.hhh.....hhhhh....eee...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jh3 A  -1 GALRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTVAYSDVTVVPVFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVLESRE---------SAVPLSEWPSRVEAGQAVLVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAAEGREDERGGDIDQAHAEAWAALRHLAERGGRLGEVLLTPYGGLFELRHTLDEGRATLDLQTVVTPEGLRDLTARDEAGRWRPIRTWRTLPRGWRAVLSPADLRLGLELLYPAVIEESYAHEHRRLHWTPWMSTARRQTGTLARVQRATPDQVDTVAAQVCASCLRTRLWAGHTLGQTIFSGVPGGLPCAEACTVLLAAVRDEVGRE 466
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178|        -|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458        
                                                                                                                                                                                                              179       189                                                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:459
 aligned with Q9RS86_DEIRA | Q9RS86 from UniProtKB/TrEMBL  Length:472

    Alignment length:468
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458        
         Q9RS86_DEIRA     - --MRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTVAYSDVTVVPVFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVLESREALTPESHAASAVPLSEWPSRVEAGQAVLVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAAEGREDERGGDIDQAHAEAWAALRHLAERGGRLGEVLLTPYGGLFELRHTLDEGRATLDLQTVVTPEGLRDLTARDEAGRWRPIRTWRTLPRGWRAVLSPADLRLGLELLYPAVIEESYAHEHRRLHWTPWMSTARRQTGTLARVQRATPDQVDTVAAQVCASCLRTRLWAGHTLGQTIFSGVPGGLPCAEACTVLLAAVRDEVGRE 466
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......hhhhhhhhhhhhhhhhhhhh......eeeeee.....hhhhhhhhh...eeeeee.....hhhhhhhhhhhhh...........eeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhh.eeeeeee....hhhhhhhhhhhhhhh....eeeee....---------..ee...hhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhheee..eeeeee..eeeeee.hhh..hhhhheee.hhhhhhhhh....................eeeee...hhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.hhh.....hhhhh....eee...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jh3 B  -1 GALRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTVAYSDVTVVPVFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVLESRE---------SAVPLSEWPSRVEAGQAVLVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAAEGREDERGGDIDQAHAEAWAALRHLAERGGRLGEVLLTPYGGLFELRHTLDEGRATLDLQTVVTPEGLRDLTARDEAGRWRPIRTWRTLPRGWRAVLSPADLRLGLELLYPAVIEESYAHEHRRLHWTPWMSTARRQTGTLARVQRATPDQVDTVAAQVCASCLRTRLWAGHTLGQTIFSGVPGGLPCAEACTVLLAAVRDEVGRE 466
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178|        -|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458        
                                                                                                                                                                                                              179       189                                                                                                                                                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:459
 aligned with Q9RS86_DEIRA | Q9RS86 from UniProtKB/TrEMBL  Length:472

    Alignment length:468
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458        
         Q9RS86_DEIRA     - --MRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTVAYSDVTVVPVFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVLESREALTPESHAASAVPLSEWPSRVEAGQAVLVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAAEGREDERGGDIDQAHAEAWAALRHLAERGGRLGEVLLTPYGGLFELRHTLDEGRATLDLQTVVTPEGLRDLTARDEAGRWRPIRTWRTLPRGWRAVLSPADLRLGLELLYPAVIEESYAHEHRRLHWTPWMSTARRQTGTLARVQRATPDQVDTVAAQVCASCLRTRLWAGHTLGQTIFSGVPGGLPCAEACTVLLAAVRDEVGRE 466
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......hhhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhh...eeeeee.....hhhhhhhhhhhh............eeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhh.eeeeeee....hhhhhhhhhhhhhhh...eeeeee....---------..ee.hhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhheee..eeeeee..eeeeee.hhh..hhhhheee.hhhhhhhhh....................eeeee...hhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.hhh.....hhhhh....eee...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jh3 C  -1 GALRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTVAYSDVTVVPVFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVLESRE---------SAVPLSEWPSRVEAGQAVLVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAAEGREDERGGDIDQAHAEAWAALRHLAERGGRLGEVLLTPYGGLFELRHTLDEGRATLDLQTVVTPEGLRDLTARDEAGRWRPIRTWRTLPRGWRAVLSPADLRLGLELLYPAVIEESYAHEHRRLHWTPWMSTARRQTGTLARVQRATPDQVDTVAAQVCASCLRTRLWAGHTLGQTIFSGVPGGLPCAEACTVLLAAVRDEVGRE 466
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178|        -|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458        
                                                                                                                                                                                                              179       189                                                                                                                                                                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:456
 aligned with Q9RS86_DEIRA | Q9RS86 from UniProtKB/TrEMBL  Length:472

    Alignment length:468
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458        
         Q9RS86_DEIRA     - --MRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTVAYSDVTVVPVFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVLESREALTPESHAASAVPLSEWPSRVEAGQAVLVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAAEGREDERGGDIDQAHAEAWAALRHLAERGGRLGEVLLTPYGGLFELRHTLDEGRATLDLQTVVTPEGLRDLTARDEAGRWRPIRTWRTLPRGWRAVLSPADLRLGLELLYPAVIEESYAHEHRRLHWTPWMSTARRQTGTLARVQRATPDQVDTVAAQVCASCLRTRLWAGHTLGQTIFSGVPGGLPCAEACTVLLAAVRDEVGRE 466
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------------------------------------CbiX-2jh3D01 D:148-257                                                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------------------------------------CbiX-2jh3D02 D:148-257                                                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------------------------------------CbiX-2jh3D03 D:148-257                                                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------------------------------------------------------------------CbiX-2jh3D04 D:148-257                                                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -----------------------------------------------------------------------------------------------------------------------------------------------------CbiX-2jh3D05 D:148-257                                                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -----------------------------------------------------------------------------------------------------------------------------------------------------CbiX-2jh3D06 D:148-257                                                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) -----------------------------------------------------------------------------------------------------------------------------------------------------CbiX-2jh3D07 D:148-257                                                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) -----------------------------------------------------------------------------------------------------------------------------------------------------CbiX-2jh3D08 D:148-257                                                                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (8)
         Sec.struct. author ....eeeeee......hhhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhh...eeeeee.....hhhhhhhhhhhhh...........eeeee..eeeee..hhhhhhhhhhhhhhhhhhhh....hhh.eeeeeee....hhhhhhhhhhhhhhh...eeeeee..------------...hhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhheee..eeeeee..eeeeee.hhh..hhhhheee.hhhhhhhhhh...................eeeee...hhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.hhh.....hhhhh....eee...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jh3 D  -1 GALRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTVAYSDVTVVPVFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVLES------------AVPLSEWPSRVEAGQAVLVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAAEGREDERGGDIDQAHAEAWAALRHLAERGGRLGEVLLTPYGGLFELRHTLDEGRATLDLQTVVTPEGLRDLTARDEAGRWRPIRTWRTLPRGWRAVLSPADLRLGLELLYPAVIEESYAHEHRRLHWTPWMSTARRQTGTLARVQRATPDQVDTVAAQVCASCLRTRLWAGHTLGQTIFSGVPGGLPCAEACTVLLAAVRDEVGRE 466
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168        |-         - |     198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458        
                                                                                                                                                                                                            177          190
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2JH3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JH3)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: Chelatase (20)
(-)
Family: CbiX (4)
(-)
Deinococcus radiodurans (1)
1aCbiX-2jh3D01D:148-257
1bCbiX-2jh3D02D:148-257
1cCbiX-2jh3D03D:148-257
1dCbiX-2jh3D04D:148-257
1eCbiX-2jh3D05D:148-257
1fCbiX-2jh3D06D:148-257
1gCbiX-2jh3D07D:148-257
1hCbiX-2jh3D08D:148-257

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q9RS86_DEIRA | Q9RS86)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016852    sirohydrochlorin cobaltochelatase activity    Catalysis of the reaction: sirohydrochlorin + Co2+ = cobalt-sirohydrochlorin + 2 H+.
biological process
    GO:0009236    cobalamin biosynthetic process    The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom.
cellular component
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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  2jh3
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  Q9RS86_DEIRA | Q9RS86
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