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(-) Description

Title :  AGMATINE DEIMINASE OF ENTEROCOCCUS FAECALIS CATALYZING ITS REACTION.
 
Authors :  S. Tavarez, J. L. Llacer, V. Rubio
Date :  19 Jan 07  (Deposition) - 30 Jan 07  (Release) - 09 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,E,F  (1x)
Biol. Unit 2:  C,D,G,H  (1x)
Keywords :  Hydrolase, Agmatine Deiminase, Tetramer, Agdi, 5- Fold Pseudosymmetric Structure, Agmatine Degradation Pathway, Covalent Amidino Adduct, Agmatine Iminohydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Llacer, L. M. Polo, S. Tavarez, B. Alarcon, R. Hilario, V. Rubio
The Gene Cluster For Agmatine Catabolism Of Enterococcus Faecalis: Study Of Recombinant Putrescine Transcarbamylase And Agmatine Deiminase And A Snapshot Of Agmatine Deiminase Catalyzing Its Reaction.
J. Bacteriol. V. 189 1254 2007
PubMed-ID: 17028272  |  Reference-DOI: 10.1128/JB.01216-06

(-) Compounds

Molecule 1 - AGMATINE DEIMINASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.5.3.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: ENTEROCOCCUS FAECALIS
    Organism Taxid: 1351
    Other Details: CARBON ATOM OF THE GUANIDINIUM GROUP OF AGMATINE COVALENTLY LINKED WITH THE THIOL GROUP OF CYS357
    Strain: SD10
    Synonym: AGMATINE IMINOHYDROLASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB  EF  
Biological Unit 2 (1x):   CD  GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1AGT8Mod. Amino AcidS-{(S)-AMINO[(4-AMINOBUTYL)AMINO]METHYL}-L-CYSTEINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1AGT4Mod. Amino AcidS-{(S)-AMINO[(4-AMINOBUTYL)AMINO]METHYL}-L-CYSTEINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1AGT4Mod. Amino AcidS-{(S)-AMINO[(4-AMINOBUTYL)AMINO]METHYL}-L-CYSTEINE

(-) Sites  (0, 0)

(no "Site" information available for 2JER)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JER)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Phe A:128 -Pro A:129
2Phe B:128 -Pro B:129
3Phe C:128 -Pro C:129
4Phe D:128 -Pro D:129
5Phe E:128 -Pro E:129
6Gly E:367 -Gly E:368
7Phe F:128 -Pro F:129
8Phe G:128 -Pro G:129
9Phe H:128 -Pro H:129

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JER)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JER)

(-) Exons   (0, 0)

(no "Exon" information available for 2JER)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:366
 aligned with AGUA_ENTFA | Q837U5 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:366
                                                                                                                                                                                                                                                                                                                                                                                                     365  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   |  
           AGUA_ENTFA     2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDHLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQQEPKR--   -
               SCOP domains d2jera1 A:2-365 Agmatine iminohydrolase                                                                                                                                                                                                                                                                                                                                     -- SCOP domains
               CATH domains 2jerA00 A:2-367 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
     Sec.struct. author (1) .eee...hhhhhhee......eeeeeeee...........hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh....eeee......hhhhhh.eeeee...eeeeee.................hhhhhhhhhhhhhh..eeeee.....hhhheee...eeeeeeeehhh........hhhhhhhhhhhhhh..eeeeee..........hhhhh-----.eeeeee........hhhhhhhhhhhhh..........eeeee......eee.................eeee.......eee.eeeeeee....hhhhhhhhhhhhh...eeeeeehhhhhh.........eeee.... Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee-------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jer A   2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHcITQQEPKRVG 367
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351     | 361      
                                                                                                                                                                                                                                                                                                                                                                                             357-AGT      


Chain B from PDB  Type:PROTEIN  Length:364
 aligned with AGUA_ENTFA | Q837U5 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:364
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361    
           AGUA_ENTFA     2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDHLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQQEPKR 365
               SCOP domains d2jerb_ B: Agmatine iminohydrolase                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2jerB00 B:2-365 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .eee...hhhhhhee......eeeeeeee...........hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh....eeee......hhhhhh.eeeee...eeeeee.................hhhhhhhhhhhhhh..eeeee.....hhhheee...eeeeeeeehhh........hhhhhhhhhhhhhh..eeeeee..........hhhhh-----.eeeeee........hhhhhhhhhhhhh..........eeeee......eee.................eeee.......eee.eeeeeee....hhhhhhhhhhhhh...eeeeeehhhhhh.........eeee.. Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee------------------------------------------------------------------------------------------------------------------------------------------ Sec.struct. author (2)
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jer B   2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHcITQQEPKR 365
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351     | 361    
                                                                                                                                                                                                                                                                                                                                                                                             357-AGT    


Chain C from PDB  Type:PROTEIN  Length:367
 aligned with AGUA_ENTFA | Q837U5 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:367
                                                                                                                                                                                                                                                                                                                                                                                                     365   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   |   
           AGUA_ENTFA     2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDHLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQQEPKR---   -
               SCOP domains d2jerc_ C: Agmatine iminohydrolase                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 2jerC00 C:2-368 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .eee...hhhhhhee......eeeeeeee...........hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh....eeee......hhhhhh.eeeee...eeeeee.................hhhhhhhhhhhhhh..eeeee.....hhhheee...eeeeeeeehhh........hhhhhhhhhhhhhh..eeeeee..........hhhhh-----.eeeeee........hhhhhhhhhhhhh..........eeeee......eee.................eeee.......eee.eeeeeee....hhhhhhhhhhhhh...eeeeeehhhhhh.........eeee..... Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee--------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jer C   2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHcITQQEPKRVGG 368
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351     | 361       
                                                                                                                                                                                                                                                                                                                                                                                             357-AGT       


Chain D from PDB  Type:PROTEIN  Length:372
 aligned with AGUA_ENTFA | Q837U5 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:372
                                                                                                                                                                                                                                                                                                                                                                                                     365        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   |     -  
           AGUA_ENTFA     2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDHLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQQEPKR--------   -
               SCOP domains d2jerd_ D: Agmatine iminohydrolase                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2jerD00 D:2-373 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
     Sec.struct. author (1) .eee...hhhhhhee......eeeeeeee...........hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh....eeee......hhhhhh.eeeee...eeeeee.................hhhhhhhhhhhhhh..eeeee.....hhhheee...eeeeeeeehhh........hhhhhhhhhhhhhh..eeeeee..........hhhhh-----.eeeeee........hhhhhhhhhhhhh..........eeeee......eee.................eeee.......eee.eeeeeee....hhhhhhhhhhhhh...eeeeeehhhhhh.........eeee.......... Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee-------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jer D   2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHcITQQEPKRVGGKQNSS 373
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351     | 361       371  
                                                                                                                                                                                                                                                                                                                                                                                             357-AGT            


Chain E from PDB  Type:PROTEIN  Length:368
 aligned with AGUA_ENTFA | Q837U5 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:368
                                                                                                                                                                                                                                                                                                                                                                                                      365   
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    |   
           AGUA_ENTFA     1 MAKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDHLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQQEPKR---   -
               SCOP domains d2jere_ E: Agmatine iminohydrolase                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2jerE00 E:1-368 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ..eee...hhhhhhee......eeeeeeee...........hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh....eeee......hhhhhh.eeeee...eeeeee.................hhhhhhhhhhhhhh..eeeee.....hhhheee...eeeeeeeehhh........hhhhhhhhhhhhhh..eeeeee..........hhhhh-----.eeeeee........hhhhhhhhhhhhh..........eeeee......eee.................eeee.......eee.eeeeeee....hhhhhhhhhhhhh...eeeeeehhhhhh.........eeee..... Sec.struct. author (1)
     Sec.struct. author (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee--------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jer E   1 MAKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHcITQQEPKRVGG 368
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350      |360        
                                                                                                                                                                                                                                                                                                                                                                                              357-AGT       


Chain F from PDB  Type:PROTEIN  Length:367
 aligned with AGUA_ENTFA | Q837U5 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:367
                                                                                                                                                                                                                                                                                                                                                                                                     365   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   |   
           AGUA_ENTFA     2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDHLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQQEPKR---   -
               SCOP domains d2jerf_ F: Agmatine iminohydrolase                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 2jerF00 F:2-368 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .eee...hhhhhhee......eeeeeeee...........hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh....eeee......hhhhhh.eeeee...eeeeee.................hhhhhhhhhhhhhh..eeeee.....hhhheee...eeeeeeeehhh........hhhhhhhhhhhhhh..eeeeee..........hhhhh-----.eeeeee........hhhhhhhhhhhhh..........eeeee......eee.................eeee.......eee.eeeeeee....hhhhhhhhhhhhh...eeeeeehhhhhh.........eeee..... Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee--------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jer F   2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHcITQQEPKRVGG 368
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351     | 361       
                                                                                                                                                                                                                                                                                                                                                                                             357-AGT       


Chain G from PDB  Type:PROTEIN  Length:366
 aligned with AGUA_ENTFA | Q837U5 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:366
                                                                                                                                                                                                                                                                                                                                                                                                     365  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   |  
           AGUA_ENTFA     2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDHLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQQEPKR--   -
               SCOP domains d2jerg_ G: Agmatine iminohydrolase                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 2jerG00 G:2-367 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
     Sec.struct. author (1) .eee...hhhhhhee......eeeeeeee...........hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh....eeee......hhhhhh.eeeee...eeeeee.................hhhhhhhhhhhhhh..eeeee.....hhhheee...eeeeeeeehhh........hhhhhhhhhhhhhh..eeeeee..........hhhhh-----.eeeeee........hhhhhhhhhhhhh..........eeeee......eee.................eeee.......eee.eeeeeee....hhhhhhhhhhhhh...eeeeeehhhhhh.........eeee.... Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee-------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jer G   2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHcITQQEPKRVG 367
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351     | 361      
                                                                                                                                                                                                                                                                                                                                                                                             357-AGT      


Chain H from PDB  Type:PROTEIN  Length:365
 aligned with AGUA_ENTFA | Q837U5 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:365
                                                                                                                                                                                                                                                                                                                                                                                                     365 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   | 
           AGUA_ENTFA     2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDHLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQQEPKR-   -
               SCOP domains d2jerh_ H: Agmatine iminohydrolase                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2jerH00 H:2-366 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                                CATH domains
           Pfam domains (1) -------------PAD_porph-2jerH01 H:15-363                                                                                                                                                                                                                                                                                                                                   --- Pfam domains (1)
           Pfam domains (2) -------------PAD_porph-2jerH02 H:15-363                                                                                                                                                                                                                                                                                                                                   --- Pfam domains (2)
           Pfam domains (3) -------------PAD_porph-2jerH03 H:15-363                                                                                                                                                                                                                                                                                                                                   --- Pfam domains (3)
           Pfam domains (4) -------------PAD_porph-2jerH04 H:15-363                                                                                                                                                                                                                                                                                                                                   --- Pfam domains (4)
           Pfam domains (5) -------------PAD_porph-2jerH05 H:15-363                                                                                                                                                                                                                                                                                                                                   --- Pfam domains (5)
           Pfam domains (6) -------------PAD_porph-2jerH06 H:15-363                                                                                                                                                                                                                                                                                                                                   --- Pfam domains (6)
           Pfam domains (7) -------------PAD_porph-2jerH07 H:15-363                                                                                                                                                                                                                                                                                                                                   --- Pfam domains (7)
           Pfam domains (8) -------------PAD_porph-2jerH08 H:15-363                                                                                                                                                                                                                                                                                                                                   --- Pfam domains (8)
     Sec.struct. author (1) .eee...hhhhhhee......eeeeeeee...........hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh....eeee......hhhhhh.eeeee...eeeeee.................hhhhhhhhhhhhhh..eeeee.....hhhheee...eeeeeeeehhh........hhhhhhhhhhhhhh..eeeeee..........hhhhh-----.eeeeee........hhhhhhhhhhhhh..........eeeee......eee.................eeee.......eee.eeeeeee....hhhhhhhhhhhhh...eeeeeehhhhhh.........eeee... Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jer H   2 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHcITQQEPKRV 366
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351     | 361     
                                                                                                                                                                                                                                                                                                                                                                                             357-AGT
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: GME (20)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (AGUA_ENTFA | Q837U5)
molecular function
    GO:0047632    agmatine deiminase activity    Catalysis of the reaction: agmatine + H2O = N-carbamoylputrescine + NH3.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004668    protein-arginine deiminase activity    Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3.
biological process
    GO:0009446    putrescine biosynthetic process    The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine.

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  2jer
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2j2t AGMATINE DEIMINASE FROM ENTEROCOCCUS FAECALIS COVALENTLY LINKED WITH A REACTION INTERMEDIATE