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Title :   JEL42 FAB/HPR COMPLEX

Authors :   L. Prasad, E. B. Waygood, J. S. Lee, L. T. J. Delbaere

Date :   24 Feb 98 (Deposition) - 27 May 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : H,L,P

Keywords :   Antibody-Protein Complex, Histidine-Containing Protein, Molecular Recognition, Complex (Antibody/Antigen) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Prasad, E. B. Waygood, J. S. Lee, L. T. J. Delbaere
The 2. 5 A Resolution Structure Of The Jel42 Fab Fragment/Hpr Complex
J. Mol. Biol. V. 280 829 1998
PubMed-ID: 9671553 | Reference-DOI: 10.1006/JMBI.1998.1888
(for further references see the PDB file header)

Molecule 1 - JEL42 FAB FRAGMENT
	Chains	:	L
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Strain	:	BALB/C

Molecule 2 - JEL42 FAB FRAGMENT
	Chains	:	H
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Strain	:	BALB/C

Molecule 3 - HISTIDINE-CONTAINING PROTEIN
	Chains	:	P
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	HPR

		1	2	3
Asymmetric/Biological Unit	:	H	L	P

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER L:92 , HIS L:93 , VAL L:94 , GLN P:3	BINDING SITE FOR RESIDUE SO4 L 801
2	AC2	SOFTWARE	ARG P:17 , GLU P:85	BINDING SITE FOR RESIDUE SO4 P 802

Asymmetric/Biological Unit

No.	Residues
1	H:22	-	H:92
2	H:142	-	H:208
3	L:23	-	L:88
4	L:134	-	L:194

Asymmetric/Biological Unit

No.	Residues
1	Thr L:7	-	Pro L:8
2	Val L:94	-	Pro L:95
3	Tyr L:140	-	Pro L:141
4	Phe H:148	-	Pro H:149
5	Glu H:150	-	Pro H:151
6	Arg H:200	-	Pro H:202

(no "SAP(SNP)/Variant" information available for 2JEL)

Asymmetric/Biological Unit (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PTS_HPR_DOM	PS51350	PTS HPR domain profile.	PTHP_ECOLI	1-85	1	P:1-85
2	PTS_HPR_HIS	PS00369	PTS HPR domain histidine phosphorylation site signature.	PTHP_ECOLI	13-20	1	P:13-20
3	PTS_HPR_SER	PS00589	PTS HPR domain serine phosphorylation site signature.	PTHP_ECOLI	39-54	1	P:39-54

(no "Exon" information available for 2JEL)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain H from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                           
               SCOP domains d2jelh1 H:1-113 Immunoglobulin heavy chain variable domain, VH                                                        d2jelh2 H:114-226 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 2jelH01 H:1-113 Immunoglobulins                                                                                       2jelH02 H:114-225 Immunoglobulins                                                                  - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee...hhh.eeeeeee.....eeeeeee......eee.hhh...eeeeeehhh.eeeeee....hhh.eeeeeeee............eeeee........eeeee..........eeeeeeeee.......eeee........eee...eee..eeeeeeeeeee.........eeeeeehhh.eeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2jel H    1 QVQLAQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCARVMGEQYFDVWGAGTTVIVSSAATTPPSVYPLAPGSGGQGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLAADLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIAPG  226
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |  105       115       125    || 137       147      |162      |173      |185       195||||   208       218        
                                                                              52A                            82A||               100A                           130|                  154|||    169|      180|          196|||                        
                                                                                                              82B|                                               133                   156||     171       183           199||                        
                                                                                                               82C                                                                      157|                              200|                        
                                                                                                                                                                                         162                               202

Chain L from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                          
               SCOP domains d2jell1 L:1-108 Immunoglobulin light chain kappa variable domain, VL-kappa                                       d2jell2 L:109-212 Immunoglobulin light chain kappa constant domain, CL-kappa                             SCOP domains
               CATH domains 2jelL01 L:1-108 Immunoglobulins                                                                                  2jelL02 L:109-211 Immunoglobulins                                                                      - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee............eeeeee......eeee.............eeeeee..eeeeee....hhh.eeeeeee...........eeeeee......eeeee...hhhhhh.eeeeeeeee......eeeeee.........eeeee...........eeeeeeeehhhhh...eeeeeeee......eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2jel L    1 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHGNGNTYLEWYLQKPGQSPKLLIYKISNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIGDGARQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSDSPIVKSFNRN  212
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       
                                                     27A||||                                                                                                                                                                                         
                                                      27B|||                                                                                                                                                                                         
                                                       27C||                                                                                                                                                                                         
                                                        27D|                                                                                                                                                                                         
                                                         27E

Chain P from PDB  Type:PROTEIN  Length:85
 aligned with PTHP_ECOLI | P0AA04 from UniProtKB/Swiss-Prot  Length:85

    Alignment length:85
                                    10        20        30        40        50        60        70        80     
          PTHP_ECOLI      1 MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE   85
               SCOP domains d2jelp_ P: Histidine-containing phosphocarrier protein (HPr)                          SCOP domains
               CATH domains 2jelP00 P:1-85  [code=3.30.1340.10, no name defined]                                  CATH domains
               Pfam domains PTS-HPr-2jelP01 P:1-84                                                              - Pfam domains
         Sec.struct. author .eeeeee........hhhhhhhhhhhhh...eeeeee..eeee...hhhhhh.......eeeeeee...hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PTS_HPR_DOM  PDB: P:1-85 UniProt: 1-85                                                PROSITE (1)
                PROSITE (2) ------------PTS_HPR_------------------PTS_HPR_SER     ------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------- Transcript
                2jel P    1 MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE   85
                                    10        20        30        40        50        60        70        80

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Histidine-containing Protein; Chain: A; (38)

Homologous Superfamily: [code=3.30.1340.10, no name defined] (37)

House mouse (Mus musculus) (1)

2jelP00

P:1-85

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

2a	2jelL02	L:109-211
2b	2jelL01	L:1-108
2c	2jelH02	H:114-225
2d	2jelH01	H:1-113

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: PTS-HPr] (26)

Family: PTS-HPr (26)

Escherichia coli (strain K12) (5)

PTS-HPr-2jelP01

P:1-84

Asymmetric/Biological Unit(hide GO term definitions)

Chain P (PTHP_ECOLI | P0AA04)

molecular function
	GO:0008047	enzyme activator activity	Binds to and increases the activity of an enzyme.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0008965	phosphoenolpyruvate-protein phosphotransferase activity	Catalysis of the reaction: phosphoenolpyruvate + protein L-histidine = pyruvate + protein N(pi)-phospho-L-histidine.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0008643	carbohydrate transport	The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
	GO:0009401	phosphoenolpyruvate-dependent sugar phosphotransferase system	The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0043085	positive regulation of catalytic activity	Any process that activates or increases the activity of an enzyme.
	GO:0045819	positive regulation of glycogen catabolic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0019197	phosphoenolpyruvate-dependent sugar phosphotransferase complex	Includes phosphoenolpyruvate-protein phosphatase (enzyme I of the phosphotransferase system) and protein-N(PI)-phosphohistidine-sugar phosphotransferase (enzyme II of the phosphotransferase system).

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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		Glu H:150 - Pro H:151	[ RasMol ]
		Phe H:148 - Pro H:149	[ RasMol ]
		Thr L:7 - Pro L:8	[ RasMol ]
		Tyr L:140 - Pro L:141	[ RasMol ]
		Val L:94 - Pro L:95	[ RasMol ]

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Description

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SS Bonds (4, 4)

Cis Peptide Bonds (6, 6)

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