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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   SKY1P BOUND TO NPL3P-DERIVED SUBSTRATE PEPTIDE

Authors :   B. Nolen, R. Lukasiewicz, J. A. Adams, D. Huang, G. Ghosh

Date :   04 Jan 07 (Deposition) - 06 Feb 07 (Release) - 11 Jan 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Mrna Export Protein, Serine/Threonine-Protein Kinase, Kinase, Transferase, Atp-Binding, Nucleotide-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Lukasiewicz, B. Nolen, J. A. Adams, G. Ghosh
The Rgg Domain Of Npl3P Recruits Sky1P Through Docking Interactions
J. Mol. Biol. V. 367 249 2007
PubMed-ID: 17239901 | Reference-DOI: 10.1016/J.JMB.2006.12.031

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE SKY1
	Chains	:	A, B
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	RESIDUES 138-306,539-742
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Synonym	:	SKY1P, SRPK

Molecule 2 - NUCLEOLAR PROTEIN 3
	Chains	:	C
	Fragment	:	UNP RESIDUES 408-414
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Synonym	:	MITOCHONDRIAL TARGETING SUPPRESSOR 1 PROTEIN, NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 1, NPL3P
	Synthetic	:	YES

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	MG	2	Ligand/Ion	MAGNESIUM ION
2	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:299 , ASP A:550 , HOH A:2013	BINDING SITE FOR RESIDUE MG A1739
2	AC2	SOFTWARE	TYR A:153 , LYS A:154 , ASP A:155 , PHE A:232 , ASN A:233 , HIS A:234 , LYS A:235 , HOH A:2054 , HOH A:2055	BINDING SITE FOR RESIDUE SO4 A1740
3	AC3	SOFTWARE	PRO B:152 , TYR B:153 , LYS B:154 , ASP B:155 , PHE B:232 , ASN B:233 , HIS B:234 , LYS B:235 , HOH B:2077 , HOH B:2078	BINDING SITE FOR RESIDUE SO4 B1738
4	AC4	SOFTWARE	ASP B:550	BINDING SITE FOR RESIDUE MG B1739

(no "SS Bond" information available for 2JD5)

(no "Cis Peptide Bond" information available for 2JD5)

(no "SAP(SNP)/Variant" information available for 2JD5)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	SKY1_YEAST	164-187	2	A:164-187 B:164-187
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	SKY1_YEAST	290-302	2	A:290-302 B:290-302

Asymmetric/Biological Unit (2, 3)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	YDR432W	1	YDR432W.1	IV:1328776-1330020	1245	NOP3_YEAST	1-414	414	1	C:654-659 (gaps)	6

2.1	YMR216C	1	YMR216C.1	XIII:701038-698810	2229	SKY1_YEAST	1-742	742	2	A:144-738 (gaps) B:146-737 (gaps)	595 592

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:353
 aligned with SKY1_YEAST | Q03656 from UniProtKB/Swiss-Prot  Length:742

    Alignment length:595
                                   153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733     
           SKY1_YEAST   144 YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIGDVEGIVQMVEALDKQKREAKRLQRHVSRSSDITANDSSDEKWAECQTSMPCGSSSNSKSRSIEKDLSKRCFRRPRRHTIITGSQPLPSPISSSNFFEMRAHFCGSSHNSFSSVSGNRNIPSSINNNSINNGIGIKNSNNSFLNSVPHSVTRMFINEDSNDNNNNDNSKNKNNNNNNSNNNNNEDIMNTPLHEEQLADSLSTFDISNISQSSDTNGPYISNTMDSNSNVSTDINSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWFEEVRD 738
               SCOP domains d2jd5a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2jd5A01 A:144-211,A:226-248 Phosphorylase Kinase; domain 1          2jd5A02       2jd5A01                2jd5A02 A:212-225,A:249-738 Transferase(Phosphotransferase                                                                                                                                                                                                                                        ) domain 1                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee....eeeeeeeee...eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh......eeeeeee..eeeeeeee....eehhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..ee....hhh.eeeeeee----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------hhhheeeeee......ee...............hhhhhhh....hhhhhhhhhhhhhhhhhh....--------..hhhhhhhhhhhhh..hhhhhhhh.hhhhhh..--...........hhhhhhhhh...hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh............................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------PROTEIN_KINASE_ATP      ------------------------------------------------------------------------------------------------------PROTEIN_KINAS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.1  PDB: A:144-738 (gaps) UniProt: 1-742 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         Transcript 2
                 2jd5 A 144 FHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLF--------TKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNS--LLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWFEEVRD 738
                                   153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303  |      -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -     | 543       553       563       573       583       593       603|      613       623       633       643  |  | 653       663       673       683       693       703       713       723       733     
                                                                                                                                                                                            306                                                                                                                                                                                                                                      539                                                              604      613                              646  |                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   649

Chain B from PDB  Type:PROTEIN  Length:360
 aligned with SKY1_YEAST | Q03656 from UniProtKB/Swiss-Prot  Length:742

    Alignment length:592
                                   155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735  
           SKY1_YEAST   146 PAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIGDVEGIVQMVEALDKQKREAKRLQRHVSRSSDITANDSSDEKWAECQTSMPCGSSSNSKSRSIEKDLSKRCFRRPRRHTIITGSQPLPSPISSSNFFEMRAHFCGSSHNSFSSVSGNRNIPSSINNNSINNGIGIKNSNNSFLNSVPHSVTRMFINEDSNDNNNNDNSKNKNNNNNNSNNNNNEDIMNTPLHEEQLADSLSTFDISNISQSSDTNGPYISNTMDSNSNVSTDINSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWFEEVR 737
               SCOP domains d2jd5b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2jd5B01 B:146-211,B:226-248 Phosphorylase Kinase; domain 1        2jd5B02       2jd5B01                2jd5B02 B:212-225,B:249-737 Transferase(Phosphotransferase                                                                                                                                                                                                                                        ) domain 1                                                                                                                                                                                              CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pkinase-2jd5B01 B:539-706                                                                                                                                               ------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pkinase-2jd5B02 B:539-706                                                                                                                                               ------------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pkinase-2jd5B03 B:539-706                                                                                                                                               ------------------------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pkinase-2jd5B04 B:539-706                                                                                                                                               ------------------------------- Pfam domains (4)
         Sec.struct. author ......ee....eeeeee........eeeeee....eeeeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh....eeeeeeeee..eeeeeeee.....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...ee....hhh.eeeeeee----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------hhhheeeeee......ee..........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh..hhhhhhhh.hhhhhh...............hhhhhhhhh...hhhhhhhhhhhhh...........hhhhhhhhhhhh.............................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------PROTEIN_KINASE_ATP      ------------------------------------------------------------------------------------------------------PROTEIN_KINAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.1  PDB: B:146-737 (gaps) UniProt: 1-742 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Transcript 2
                 2jd5 B 146 PAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWFEEVR 737
                                   155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305|        -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -   |   545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735  
                                                                                                                                                                                          306                                                                                                                                                                                                                                      539

Chain C from PDB  Type:PROTEIN  Length:5
 aligned with NOP3_YEAST | Q01560 from UniProtKB/Swiss-Prot  Length:414

    Alignment length:5
           NOP3_YEAST   408 RERSP 412
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
               Transcript 1 1.1   Transcript 1
                 2jd5 C 654 RERSP 659
                            ||   
                            ||   
                          654|   
                           656

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: Protein kinases, catalytic subunit (1977)

Protein domain: automated matches (542)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (1)

1a	d2jd5a_	A:
1b	d2jd5b_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Phosphorylase Kinase; domain 1 (1392)

Homologous Superfamily: Phosphorylase Kinase; domain 1 (1392)

Baker's yeast (Saccharomyces cerevisiae) (32)

1a	2jd5A01	A:144-211,A:226-248
1b	2jd5B01	B:146-211,B:226-248

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Transferase(Phosphotransferase); domain 1 (1379)

Homologous Superfamily: Transferase(Phosphotransferase) domain 1 (1379)

Baker's yeast (Saccharomyces cerevisiae) (21)

2a	2jd5A02	A:212-225,A:249-738
2b	2jd5B02	B:212-225,B:249-737

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PKinase (934)

Family: Pkinase (680)

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast) (15)

1a	Pkinase-2jd5B01	B:539-706
1b	Pkinase-2jd5B02	B:539-706
1c	Pkinase-2jd5B03	B:539-706
1d	Pkinase-2jd5B04	B:539-706

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (SKY1_YEAST | Q03656)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0030003	cellular cation homeostasis	Any process involved in the maintenance of an internal steady state of cations at the level of a cell.
	GO:0006873	cellular ion homeostasis	Any process involved in the maintenance of an internal steady state of ions at the level of a cell.
	GO:0006376	mRNA splice site selection	Selection of a splice site by components of the assembling spliceosome.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0042307	positive regulation of protein import into nucleus	Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain C (NOP3_YEAST | Q01560)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0000993	RNA polymerase II core binding	Interacting selectively and non-covalently with RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits.
	GO:0031370	eukaryotic initiation factor 4G binding	Interacting selectively and non-covalently with eukaryotic initiation factor 4G, a polypeptide factor involved in the initiation of ribosome-mediated translation.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0003729	mRNA binding	Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0008143	poly(A) binding	Interacting selectively and non-covalently with a sequence of adenylyl residues in an RNA molecule, such as the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006406	mRNA export from nucleus	The directed movement of mRNA from the nucleus to the cytoplasm.
	GO:0000398	mRNA splicing, via spliceosome	The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
	GO:2000805	negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled	Any process that stops, prevents or reduces the frequency, rate or extent of termination of RNA polymerase II transcription, poly(A)-coupled.
	GO:0017148	negative regulation of translation	Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
	GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
	GO:0006364	rRNA processing	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
	GO:0042254	ribosome biogenesis	A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
	GO:0006415	translational termination	The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0005730	nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Asymmetric/Biological Unit
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	NOP3_YEAST \| Q01560
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	SKY1_YEAST \| Q03656
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	NOP3_YEAST \| Q01560	:	2jvo 2jvr 2osq 2osr
	SKY1_YEAST \| Q03656	:	1how 1q8y 1q8z 1q97 1q99

1how	THE X-RAY CRYSTAL STRUCTURE OF SKY1P, AN SR PROTEIN KINASEIN YEAST
1q8y	THE STRUCTURE OF THE YEAST SR PROTEIN KINASE, SKY1P, WITHBOUND ADP
1q8z	THE APOENZYME STRUCTURE OF THE YEAST SR PROTEIN KINASE,SKY1P
1q97	THE STRUCTURE OF THE SACCHAROMYCES CEREVISIAE SR PROTEINKINASE, SKY1P, WITH BOUND ATP
1q99	CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE SRPROTEIN KINSAE, SKY1P, COMPLEXED WITH THE NON-HYDROLYZABLEATP ANALOGUE, AMP- PNP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (2, 3)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (2, 4)

Pfam Domains (1, 4)

Gene Ontology (33, 36)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File