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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MYXOMA VIRUS ANTI-APOPTOTIC PROTEIN M11L
 
Authors :  M. Kvansakul, M. F. Van Delft, E. F. Lee, J. M. Gulbis, W. D. Fairlie, D. C. S. Huang, P. M. Colman
Date :  14 Dec 06  (Deposition) - 27 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.73
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apoptosis, Bcl-2 Family, Myxoma Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kvansakul, M. F. Van Delft, E. F. Lee, J. M. Gulbis, W. D. Fairlie, D. C. S. Huang, P. M. Colman
A Structural Viral Mimic Of Prosurvival Bcl-2: A Pivotal Role For Sequestering Proapoptotic Bax And Bak.
Mol. Cell V. 25 933 2007
PubMed-ID: 17386268  |  Reference-DOI: 10.1016/J.MOLCEL.2007.02.004

(-) Compounds

Molecule 1 - M11L PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: PLYZ
    Expression System Vector: PDUET
    Fragment: RESIDUES 1-132
    Organism Scientific: MYXOMA VIRUS
    Organism Taxid: 10273
    Strain: LAUSANNE
    Synonym: M11L, APOPTOSIS REGULATOR M11L

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric/Biological Unit (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2JBX)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:33 -A:127
2B:33 -B:127

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JBX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JBX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JBX)

(-) Exons   (0, 0)

(no "Exon" information available for 2JBX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with Q85295_9POXV | Q85295 from UniProtKB/TrEMBL  Length:166

    Alignment length:132
                             1                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129  
         Q85295_9POXV     - -MMSRLKTAVYDYLNDVDITECTEMDLLCQLSNCCDFINETYAKNYDTLYDIMERDILSYNIVNIKNTLTFALRDASPSVKLATLTLLASVIKKLNKIQHTDAAMFSEVIDGIVAEEQQVIGFIQKKCKYNT 131
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jbx A   0 PmmSRLKTAVYDYLNDVDITECTEmDLLCQLSNCCDFINETYAKNYDTLYDImERDILSYNIVNIKNTLTFALRDASPSVKLATLTLLASVIKKLNKIQHTDAAmFSEVIDGIVAEEQQVIGFIQKKCKYNT 131
                             ||      9        19    |   29        39        49  |     59        69        79        89        99    |  109       119       129  
                             ||                    24-MSE                      52-MSE                                             104-MSE                       
                             1-MSE                                                                                                                              
                              2-MSE                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:129
 aligned with Q85295_9POXV | Q85295 from UniProtKB/TrEMBL  Length:166

    Alignment length:129
                                    10        20        30        40        50        60        70        80        90       100       110       120         
         Q85295_9POXV     1 MMSRLKTAVYDYLNDVDITECTEMDLLCQLSNCCDFINETYAKNYDTLYDIMERDILSYNIVNIKNTLTFALRDASPSVKLATLTLLASVIKKLNKIQHTDAAMFSEVIDGIVAEEQQVIGFIQKKCKY 129
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----M11L-2jbxB01 B:6-129                                                                                                         Pfam domains (1)
           Pfam domains (2) -----M11L-2jbxB02 B:6-129                                                                                                         Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jbx B   1 mmSRLKTAVYDYLNDVDITECTEmDLLCQLSNCCDFINETYAKNYDTLYDImERDILSYNIVNIKNTLTFALRDASPSVKLATLTLLASVIKKLNKIQHTDAAmFSEVIDGIVAEEQQVIGFIQKKCKY 129
                            ||      10        20   |    30        40        50 |      60        70        80        90       100   |   110       120         
                            1-MSE                 24-MSE                      52-MSE                                             104-MSE                     
                             2-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2JBX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JBX)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: M11L] (3)
(-)
Family: M11L (3)
(-)
Myxoma virus (3)
1aM11L-2jbxB01B:6-129
1bM11L-2jbxB02B:6-129

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q85295_9POXV | Q85295)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q85295_9POXV | Q85295: 2jby 2o42

(-) Related Entries Specified in the PDB File

2jby A VIRAL PROTEIN UNEXPECTEDLY MIMICS THE STRUCTURE AND FUNCTION OF PRO-SURVIVAL BCL-2