2JAM - JenaLib

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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN CALMODULIN-DEPENDENT PROTEIN KINASE I G

Authors :   J. E. Debreczeni, A. Bullock, T. Keates, F. H. Niesen, E. Salah, L. Shrestha, C. Smee, F. Sobott, A. C. W. Pike, G. Bunkoczi, F. Von Delft, A. Turnbull, J. Weigelt, C. H. Arrowsmith, A. Edwards, M. Sundstrom, S. Knapp

Date :   29 Nov 06 (Deposition) - 13 Mar 07 (Release) - 21 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,D,E
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,E  (1x)

Keywords :   Transferase, Kinase, Membrane, Atp-Binding, Prenylation, Serine/Threonine-Protein Kinase, Alternative Splicing, Protein Serine/Threonine Kinase, Calmodulin Binding, Calmodulin-Binding, Nucleotide Binding, Nucleotide-Binding, Lipoprotein, Polymorphism, Golgi Apparatus, Phosphorylation, Allosteric Enzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. E. Debreczeni, A. Bullock, T. Keates, F. H. Niesen, E. Salah, L. Shrestha, C. Smee, F. Sobott, A. C. W. Pike, G. Bunkoczi, F. Von Delft, A. Turnbull, J. Weigelt, C. H. Arrowsmith, A. Edwards, M. Sundstrom, S. Knapp
Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G
To Be Published
PubMed: search

Molecule 1 - CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE 1G
	Chains	:	A, B
	EC Number	:	2.7.11.17
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	R3 ROSETTA
	Expression System Vector	:	PNIC28-BSA4
	Fragment	:	CATALYTIC DOMAIN, RESIDUES 18-316
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CAM KINASE IG, CAM KINASE I GAMMA, CAMKI GAMMA, CAMKI-GAMMA, CAM-KI GAMMA, CAMKIG, CAMK-LIKE CREB KINASE III, CLICK III, CALMODULIN-DEPENDENT, PROTEIN, KINASE, I, G

Molecule 2 - POLYPEPTIDE
	Chains	:	D
	Organism Scientific	:	UNIDENTIFIED
	Organism Taxid	:	32644
	Other Details	:	UNKNOWN ORIGIN

Molecule 3 - POLYPEPTIDE
	Chains	:	E
	Organism Scientific	:	UNIDENTIFIED
	Organism Taxid	:	32644
	Other Details	:	UNKNOWN ORIGIN

		1	2	3	4
Asymmetric Unit	:	A	B	D	E
Biological Unit 1 (1x)	:	A		D
Biological Unit 2 (1x)	:		B		E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
3	J60	2	Ligand/Ion	5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	J60	1	Ligand/Ion	5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	J60	1	Ligand/Ion	5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:285 , HIS B:285	BINDING SITE FOR RESIDUE CA A1306
2	AC2	SOFTWARE	LYS A:52 , THR A:164 , ASP A:165 , PHE A:166 , SER A:169 , J60 A:1305 , HOH A:2088	BINDING SITE FOR RESIDUE EDO A1304
3	AC3	SOFTWARE	LEU A:29 , VAL A:37 , ALA A:50 , LYS A:52 , MET A:98 , GLN A:99 , LEU A:100 , VAL A:101 , LEU A:151 , THR A:164 , ASP A:165 , EDO A:1304 , TYR B:236	BINDING SITE FOR RESIDUE J60 A1305
4	AC4	SOFTWARE	LYS B:52 , THR B:164 , ASP B:165 , PHE B:166 , J60 B:1305 , HOH B:2149	BINDING SITE FOR RESIDUE EDO B1303
5	AC5	SOFTWARE	ASP A:144 , VAL A:201 , SER A:205 , HOH A:2079 , HOH A:2103 , ILE B:176 , TYR B:186 , VAL B:187 , ALA B:188	BINDING SITE FOR RESIDUE EDO B1304
6	AC6	SOFTWARE	LEU B:29 , VAL B:37 , ALA B:50 , MET B:98 , GLN B:99 , LEU B:100 , VAL B:101 , THR B:164 , ASP B:165 , EDO B:1303 , HOH B:2150	BINDING SITE FOR RESIDUE J60 B1305

(no "SS Bond" information available for 2JAM)

Asymmetric Unit

No.	Residues
1	Ser A:241	-	Pro A:242
2	Ser B:241	-	Pro B:242

Asymmetric Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_040600	E	259	Q	KCC1G_HUMAN	Polymorphism	35561962	A/B	E	260	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_040600	E	259	Q	KCC1G_HUMAN	Polymorphism	35561962	A	E	260	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_040600	E	259	Q	KCC1G_HUMAN	Polymorphism	35561962	B	E	260	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	KCC1G_HUMAN	29-56	2	A:29-56 B:29-56
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	KCC1G_HUMAN	139-151	2	A:140-152 B:140-152

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	KCC1G_HUMAN	29-56	1	A:29-56 -
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	KCC1G_HUMAN	139-151	1	A:140-152 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	KCC1G_HUMAN	29-56	1	- B:29-56
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	KCC1G_HUMAN	139-151	1	- B:140-152

Asymmetric Unit (9, 18)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000361322	1b	ENSE00001745243	chr1:209757074-209757117	44	KCC1G_HUMAN	-	0	0	-	-
1.2	ENST00000361322	2	ENSE00000476632	chr1:209768300-209768420	121	KCC1G_HUMAN	1-31	31	2	A:18-31 B:16-31	14 16
1.3	ENST00000361322	3	ENSE00000792078	chr1:209773328-209773456	129	KCC1G_HUMAN	31-74	44	2	A:31-75 (gaps) B:31-75 (gaps)	45 45
1.4	ENST00000361322	4	ENSE00000792079	chr1:209776559-209776633	75	KCC1G_HUMAN	74-99	26	2	A:75-100 B:75-100	26 26
1.5	ENST00000361322	5	ENSE00001164873	chr1:209778881-209779019	139	KCC1G_HUMAN	99-145	47	2	A:100-146 B:100-146	47 47
1.6	ENST00000361322	6	ENSE00000792081	chr1:209779665-209779788	124	KCC1G_HUMAN	146-187	42	2	A:147-188 B:147-188	42 42
1.7b	ENST00000361322	7b	ENSE00001777806	chr1:209781203-209781278	76	KCC1G_HUMAN	187-212	26	2	A:188-213 B:188-213	26 26
1.8	ENST00000361322	8	ENSE00001605451	chr1:209782325-209782437	113	KCC1G_HUMAN	212-250	39	2	A:213-251 B:213-251	39 39
1.9b	ENST00000361322	9b	ENSE00000792084	chr1:209783196-209783274	79	KCC1G_HUMAN	250-276	27	2	A:251-277 B:251-277	27 27
1.10	ENST00000361322	10	ENSE00000792085	chr1:209784810-209784897	88	KCC1G_HUMAN	276-305	30	2	A:277-303 B:277-302	27 26
1.11b	ENST00000361322	11b	ENSE00000792086	chr1:209785137-209785561	425	KCC1G_HUMAN	306-447	142	0	-	-
1.12	ENST00000361322	12	ENSE00001167104	chr1:209786130-209786257	128	KCC1G_HUMAN	447-476	30	0	-	-
1.13	ENST00000361322	13	ENSE00001164825	chr1:209786385-209787283	899	KCC1G_HUMAN	-	0	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:279
 aligned with KCC1G_HUMAN | Q96NX5 from UniProtKB/Swiss-Prot  Length:476

    Alignment length:285
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297     
          KCC1G_HUMAN    18 NIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNTALHRDIYPSVSLQIQKNFAKS 302
               SCOP domains d2jama_ A: automated matches                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains -2jamA01 A:19-100 Phosphorylase Kinase;       domain 1                            2jamA02 A:101-303 Transferase(Phosphotransferase) domain 1                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhheeeeeeeee...eeeeeeee.....eeeeeeee.------hhhhhhhhhhhhh.......eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhhhhee........ee..............hhhhhh...............hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh............hhhhhhhhhhhhh.......hhhhhhhhhhhhh.......hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q------------------------------------------- SAPs(SNPs)
                    PROSITE -----------PROTEIN_KINASE_ATP          ----------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2      ------------------------------------------Exon 1.4  PDB: A:75-100   ----------------------------------------------Exon 1.6  PDB: A:147-188 UniProt: 146-187 ------------------------Exon 1.8  PDB: A:213-251               -------------------------Exon 1.10  PDB: A:277-303   Transcript 1 (1)
           Transcript 1 (2) -------------Exon 1.3  PDB: A:31-75 (gaps) UniProt: 31-74------------------------Exon 1.5  PDB: A:100-146 UniProt: 99-145       -----------------------------------------Exon 1.7b  PDB: A:188-213 -------------------------------------Exon 1.9b  PDB: A:251-277  -------------------------- Transcript 1 (2)
                 2jam A  18 NIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKK------SSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNTALHRDIYPSVSLQIQKNFAKS 303
                                    27        37        47        |-     |  68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298     
                                                                 56     64

Chain B from PDB  Type:PROTEIN  Length:280
 aligned with KCC1G_HUMAN | Q96NX5 from UniProtKB/Swiss-Prot  Length:476

    Alignment length:286
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295      
          KCC1G_HUMAN    16 TTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNTALHRDIYPSVSLQIQKNFAK 301
               SCOP domains d2jamb_ B: automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---2jamB01 B:19-100 Phosphorylase Kinase;       domain 1                            2jamB02 B:101-302 Transferase(Phosphotransferase) domain 1                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhheeeeeeeee...eeeeeeee.....eeeeeeee.------hhhhhhhhhhhhh.......eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhhhhee........ee..............hhhhhh...............hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh............hhhhhhhhhhhhh.......hhhhhhhhhhhhh.......hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q------------------------------------------ SAPs(SNPs)
                    PROSITE -------------PROTEIN_KINASE_ATP          ----------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2        ------------------------------------------Exon 1.4  PDB: B:75-100   ----------------------------------------------Exon 1.6  PDB: B:147-188 UniProt: 146-187 ------------------------Exon 1.8  PDB: B:213-251               -------------------------Exon 1.10  PDB: B:277-302  Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: B:31-75 (gaps) UniProt: 31-74------------------------Exon 1.5  PDB: B:100-146 UniProt: 99-145       -----------------------------------------Exon 1.7b  PDB: B:188-213 -------------------------------------Exon 1.9b  PDB: B:251-277  ------------------------- Transcript 1 (2)
                 2jam B  16 TTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKK------SSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNTALHRDIYPSVSLQIQKNFAK 302
                                    25        35        45        55|      |66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
                                                                   56     64

Chain D from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ..ee.. Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 2jam D  14 GVSKFA  19

Chain E from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .ee. Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2jam E  14 VSKF  17

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: Protein kinases, catalytic subunit (1977)

Protein domain: automated matches (542)

Human (Homo sapiens) [TaxId: 9606] (452)

1a	d2jama_	A:
1b	d2jamb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Phosphorylase Kinase; domain 1 (1392)

Homologous Superfamily: Phosphorylase Kinase; domain 1 (1392)

Human (Homo sapiens) (1036)

1a	2jamA01	A:19-100
1b	2jamB01	B:19-100

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Transferase(Phosphotransferase); domain 1 (1379)

Homologous Superfamily: Transferase(Phosphotransferase) domain 1 (1379)

Human (Homo sapiens) (1049)

2a	2jamB02	B:101-302
2b	2jamA02	A:101-303

(no "Pfam Domain" information available for 2JAM)

Asymmetric Unit(hide GO term definitions)

Chain A,B (KCC1G_HUMAN | Q96NX5)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0005516	calmodulin binding	Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
	GO:0004683	calmodulin-dependent protein kinase activity	Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0005954	calcium- and calmodulin-dependent protein kinase complex	An enzyme complex which in eukaryotes is composed of four different chains: alpha, beta, gamma, and delta. The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 8 to 12 subunits. Catalyzes the phosphorylation of proteins to O-phosphoproteins.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0012505	endomembrane system	A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0043005	neuron projection	A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		J60	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ser A:241 - Pro A:242	[ RasMol ]
		Ser B:241 - Pro B:242	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	2jam
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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		Structure Classification	:	CATH \| Dali \| SCOP
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	KCC1G_HUMAN \| Q96NX5
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		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	2.7.11.17
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
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		Interatomic Contacts of Structural Units	:	CSU
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(no "Entries Sharing at Least One Protein Chain" available for 2JAM)

(no "Related Entries Specified in the PDB File" available for 2JAM)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

PROSITE Motifs (2, 4)

Exons (9, 18)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (20, 20)

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Still Images

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File