2J85 - JenaLib

Title :   B116 OF SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS (STIV)

Authors :   E. T. Larson, D. Reiter, M. J. Young, C. M. Lawrence

Date :   19 Oct 06 (Deposition) - 02 Nov 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.39

Chains :   Asym./Biol. Unit : A,B

Keywords :   Viral Protein, Archaeal Virus, Crenarchaeal Virus, B116, Stiv, Archaea, Sulfolobus, Crenarchaea, Sulfolobus Turreted Icosahedral Virus, Hypothetical Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. T. Larson, B. J. Eilers, D. Reiter, A. C. Ortmann, M. J. Young, C. M. Lawrence
A New Dna Binding Protein Highly Conserved In Diverse Crenarchaeal Viruses
Virology V. 363 387 2007
PubMed-ID: 17336360 | Reference-DOI: 10.1016/J.VIROL.2007.01.027

Compounds

Molecule 1 - STIV B116
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PEXP14-STIVB116
	Expression System Strain	:	B834(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector	:	PDEST14
	Organism Common	:	STIV
	Organism Scientific	:	SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS
	Organism Taxid	:	269145
	Other Details	:	STIV WAS ISOLATED FROM SULFOLOBUS SPECIES IN ACIDIC HOT SPRINGS (PH 2.9-3.9, 72-92 DEGREES C) IN THE RABBIT CREEK THERMAL AREA WITHIN MIDWAY GEYSER BASIN INYELLOWSTONE NATIONAL PARK (RICE, ET AL. PNAS. MAY 18, 2004 VOL. 101 NO. 20. PP. 7716-7720.)
	Strain	:	ISOLATE YNPRC179

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (0, 0)

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:118
 aligned with Q6Q0K9_9VIRU | Q6Q0K9 from UniProtKB/TrEMBL  Length:116

    Alignment length:118
                                                                                                                                            116   
                                    11        21        31        41        51        61        71        81        91       101       111    |   
         Q6Q0K9_9VIRU     2 GKVFLTNAFSINMLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKMNEGDEALIIMISQRLEEGKVLSDKEIKDMYRQGKISFYEVW---   -
               SCOP domains d2j85a1 A:2-116 Hypothetical protein B116                                                                          --- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhh.....eeeeeeeehhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh................eeeeeee..........hhhhhhhhhhh..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2j85 A   2 GKVFLTNAFSINmLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKmNEGDEALIImISQRLEEGKVLSDKEIKDmYRQGKISFYEVWHHH 119
                                    11  |     21        31        41        51        61        71   |    81   |    91       101  |    111        
                                       14-MSE                                                       75-MSE    85-MSE            104-MSE

Chain B from PDB  Type:PROTEIN  Length:117
 aligned with Q6Q0K9_9VIRU | Q6Q0K9 from UniProtKB/TrEMBL  Length:116

    Alignment length:117
                                                                                                                                            116  
                                    11        21        31        41        51        61        71        81        91       101       111    |  
         Q6Q0K9_9VIRU     2 GKVFLTNAFSINMLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKMNEGDEALIIMISQRLEEGKVLSDKEIKDMYRQGKISFYEVW--   -
               SCOP domains d2j85b_ B: automated matches                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhh.....eeeeeeeehhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh................eeeeeee..........hhhhhhhhhhh..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 2j85 B   2 GKVFLTNAFSINmLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKmNEGDEALIImISQRLEEGKVLSDKEIKDmYRQGKISFYEVWHH 118
                                    11  |     21        31        41        51        61        71   |    81   |    91       101  |    111       
                                       14-MSE                                                       75-MSE    85-MSE            104-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Cis Peptide Bonds
		Phe A:18 - Pro A:19	[ RasMol ]
		Phe B:18 - Pro B:19	[ RasMol ]

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