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Title :   CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONENT C2-I OF THE C2-TOXIN FROM CLOSTRIDIUM BOTULINUM AT PH 3.0 (MUT-S361R)

Authors :   C. Schleberger, H. Hochmann, H. Barth, K. Aktories, G. E. Schulz

Date :   23 Aug 06 (Deposition) - 11 Oct 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym./Biol. Unit : A

Keywords :   Adp-Ribosyltransferase, Toxin, Clostridium Botulinum (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Schleberger, H. Hochmann, H. Barth, K. Aktories, G. E. Schulz
Structure And Action Of The Binary C2 Toxin From Clostridium Botulinum.
J. Mol. Biol. V. 364 705 2006
PubMed-ID: 17027031 | Reference-DOI: 10.1016/J.JMB.2006.09.002

Molecule 1 - C2 TOXIN COMPONENT I
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-3B
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Mutation	:	YES
	Organism Scientific	:	CLOSTRIDIUM BOTULINUM
	Organism Taxid	:	1491
	Synonym	:	ADP-RIBOSYLTRANSFERASE C2-I

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 21)

No.	Name	Count	Type	Full Name
1	GOL	11	Ligand/Ion	GLYCEROL
2	SO4	10	Ligand/Ion	SULFATE ION

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:72 , GLU A:83 , ARG A:86 , LYS A:224 , GLY A:235 , TYR A:379 , GOL A:1433 , HOH A:2272 , HOH A:2483 , HOH A:2503	BINDING SITE FOR RESIDUE SO4 A1443
02	AC2	SOFTWARE	PRO A:14 , GLU A:15 , SER A:16 , ILE A:426 , GLN A:427 , HOH A:2504 , HOH A:2505	BINDING SITE FOR RESIDUE SO4 A1444
03	AC3	SOFTWARE	SER A:114 , ILE A:115 , ARG A:116 , LYS A:328 , HOH A:2384 , HOH A:2391 , HOH A:2506 , HOH A:2507 , HOH A:2508	BINDING SITE FOR RESIDUE SO4 A1445
04	AC4	SOFTWARE	LYS A:50 , THR A:51 , ASP A:54 , ASN A:103 , HOH A:2059 , HOH A:2509 , HOH A:2510 , HOH A:2511	BINDING SITE FOR RESIDUE SO4 A1446
05	AC5	SOFTWARE	LYS A:131 , LYS A:335 , HOH A:2512 , HOH A:2513 , HOH A:2515	BINDING SITE FOR RESIDUE SO4 A1447
06	AC6	SOFTWARE	LYS A:339 , GLU A:340 , HOH A:2402 , HOH A:2516	BINDING SITE FOR RESIDUE SO4 A1448
07	AC7	SOFTWARE	ASN A:34 , ASN A:35 , HOH A:2517 , HOH A:2518	BINDING SITE FOR RESIDUE SO4 A1449
08	AC8	SOFTWARE	TRP A:21 , GLU A:25 , ARG A:28 , ASP A:95 , ARG A:96 , GLU A:371 , HOH A:2114	BINDING SITE FOR RESIDUE SO4 A1450
09	AC9	SOFTWARE	THR A:66 , GLU A:69 , SER A:382 , GLY A:383 , GLN A:385 , HOH A:2519 , HOH A:2520 , HOH A:2521	BINDING SITE FOR RESIDUE SO4 A1451
10	BC1	SOFTWARE	SER A:226 , GLU A:227 , ALA A:228 , HOH A:2267 , HOH A:2522 , HOH A:2523	BINDING SITE FOR RESIDUE SO4 A1452
11	BC2	SOFTWARE	ARG A:299 , ARG A:300 , SER A:348 , PHE A:358 , GOL A:1434 , HOH A:2482	BINDING SITE FOR RESIDUE GOL A1432
12	BC3	SOFTWARE	ILE A:60 , ILE A:68 , LEU A:79 , ARG A:86 , ASN A:223 , GOL A:1436 , SO4 A:1443 , HOH A:2483	BINDING SITE FOR RESIDUE GOL A1433
13	BC4	SOFTWARE	ARG A:299 , SER A:347 , SER A:348 , ARG A:361 , GOL A:1432 , HOH A:2295	BINDING SITE FOR RESIDUE GOL A1434
14	BC5	SOFTWARE	ASN A:34 , GLU A:37 , GLU A:87 , LYS A:91 , LYS A:240 , HOH A:2340 , HOH A:2484 , HOH A:2485 , HOH A:2518	BINDING SITE FOR RESIDUE GOL A1435
15	BC6	SOFTWARE	ARG A:86 , LYS A:224 , GOL A:1433 , HOH A:2488 , HOH A:2489 , HOH A:2490	BINDING SITE FOR RESIDUE GOL A1436
16	BC7	SOFTWARE	ASP A:59 , THR A:407 , HOH A:2457 , HOH A:2491 , HOH A:2492	BINDING SITE FOR RESIDUE GOL A1437
17	BC8	SOFTWARE	ASN A:55 , THR A:58 , GLU A:108 , THR A:142 , LYS A:143 , PHE A:144 , SER A:145 , HOH A:2493 , HOH A:2494 , HOH A:2495	BINDING SITE FOR RESIDUE GOL A1438
18	BC9	SOFTWARE	THR A:66 , LYS A:352 , PRO A:355 , SER A:356 , GLN A:385 , HOH A:2414 , HOH A:2433 , HOH A:2496 , HOH A:2498	BINDING SITE FOR RESIDUE GOL A1439
19	CC1	SOFTWARE	ARG A:299 , PRO A:305 , ILE A:341 , ASN A:343 , PHE A:365 , PHE A:398 , HOH A:2411 , HOH A:2499 , HOH A:2500	BINDING SITE FOR RESIDUE GOL A1440
20	CC2	SOFTWARE	ARG A:361 , HOH A:2352 , HOH A:2353 , HOH A:2416 , HOH A:2501	BINDING SITE FOR RESIDUE GOL A1441
21	CC3	SOFTWARE	GLN A:293 , THR A:294 , HOH A:2348	BINDING SITE FOR RESIDUE GOL A1442

(no "SS Bond" information available for 2J3X)

Asymmetric/Biological Unit

No.	Residues
1	Val A:269	-	Pro A:270

(no "SAP(SNP)/Variant" information available for 2J3X)

(no "PROSITE Motif" information available for 2J3X)

(no "Exon" information available for 2J3X)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:430
 aligned with O69275_CLOBO | O69275 from UniProtKB/TrEMBL  Length:431

    Alignment length:430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
         O69275_CLOBO     2 PIIKEPIDFINKPESEAKKWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENHNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELNRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKSRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI 431
               SCOP domains d2j3xa1 A:2-217 automated matches                                                                                                                                                                                       d2j3xa2 A:218-431 automated matches                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhh.....eeeee...hhhhh...............hhhhhhhhhhhh...eee...eeee..hhhh.....eeeeeee......eeee....eeeee...eeeeeeeeeeeee..eeeeeeeeeeee.........hhhhhhhhhh.hhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh......eeeeeee..hhhh.......eeee..eeee.hhhhhhhhhhhh.eeeee...eeee.....hhhh...eeeeeee.....eee...........eeee...eeeeeeeeeeeeeeee..eeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j3x A   2 PIIKEPIDFINKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENQNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKRRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI 431
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: ADP-ribosylation (157)

Superfamily: ADP-ribosylation (157)

Family: automated matches (42)

Protein domain: automated matches (42)

Clostridium botulinum [TaxId: 1491] (3)

1a	d2j3xa1	A:2-217
1b	d2j3xa2	A:218-431

(no "CATH Domain" information available for 2J3X)

(no "Pfam Domain" information available for 2J3X)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (O69275_CLOBO | O69275)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Val A:269 - Pro A:270	[ RasMol ]

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	O69275_CLOBO \| O69275	:	2j3v 2j3z

2j3v	CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONENT C2-I OF THE C2-TOXIN FROM CLOSTRIDIUM BOTULINUM AT PH 3.0
2j3z	CRYSTAL STRUCTURE OF THE EZYMATIC COMPONENT C2-I OF THE C2-TOXIN FROM CLOSTRIDIUM BOTULINUM AT PH 6.1
2j42	LOW QUALITY CRYSTAL STRUCTURE OF THE TRANSPORT COMPONENT C2-II OF THE C2-TOXIN FROM CLOSTRIDIUM BOTULINUM

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 21)

Sites (21, 21)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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