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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   L-FICOLIN COMPLEXED TO N-ACETYL-CYSTEIN (150MM)

Authors :   V. Garlatti, C. Gaboriaud

Date :   17 Aug 06 (Deposition) - 23 Jan 07 (Release) - 21 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)

Keywords :   Glycoprotein, Ficrinogen-Like, Innate Immunity, Pattern Recognition Protein, Lectin, Collagen, Immunology, Lectin- Like (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Garlatti, N. Belloy, L. Martin, M. Lacroix, M. Matsushita, Y. Endo, T. Fujita, J. C. Fontecilla-Camps, G. J. Arlaud, N. M. Thielens, C. Gaboriaud
Structural Insights Into The Innate Immune Recognition Specificities Of L- And H-Ficolins.
Embo J. V. 26 623 2007
PubMed-ID: 17215869 | Reference-DOI: 10.1038/SJ.EMBOJ.7601500

Molecule 1 - FICOLIN-2
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	BINDING DOMAIN, RESIDUES 97-313
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	L-FICOLIN, COLLAGEN/FIBRINOGEN DOMAIN-CONTAINING PROTEIN 2, FICOLIN-B, SERUM LECTIN P35, EBP-37, HUCOLIN
	Tissue	:	PLASMA

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 24)

No.	Name	Count	Type	Full Name
1	BMA	1	Ligand/Ion	BETA-D-MANNOSE
2	CA	6	Ligand/Ion	CALCIUM ION
3	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SC2	13	Ligand/Ion	N-ACETYL-L-CYSTEINE

Biological Unit 1 (3, 9)

No.	Name	Count	Type	Full Name
1	BMA	1	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SC2	6	Ligand/Ion	N-ACETYL-L-CYSTEINE

Biological Unit 2 (2, 9)

No.	Name	Count	Type	Full Name
1	BMA	-1	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SC2	7	Ligand/Ion	N-ACETYL-L-CYSTEINE

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE C:236 , CYS C:245 , HIS C:246 , PHE C:262 , TYR C:274	BINDING SITE FOR RESIDUE BMA C1291
02	AC2	SOFTWARE	ASP A:224 , ASP A:226 , ASN A:228 , GLY A:230	BINDING SITE FOR RESIDUE CA A1289
03	AC3	SOFTWARE	ASP B:224 , ASP B:226 , ASN B:228 , GLY B:230	BINDING SITE FOR RESIDUE CA B1291
04	AC4	SOFTWARE	ASP C:224 , ASP C:226 , ASN C:228 , GLY C:230	BINDING SITE FOR RESIDUE CA C1292
05	AC5	SOFTWARE	ASP D:224 , ASP D:226 , ASN D:228 , THR D:229 , GLY D:230	BINDING SITE FOR RESIDUE CA D1289
06	AC6	SOFTWARE	ASP E:224 , ASP E:226 , ASN E:228 , GLY E:230	BINDING SITE FOR RESIDUE CA E1292
07	AC7	SOFTWARE	ASP F:224 , ASP F:226 , ASN F:228 , GLY F:230	BINDING SITE FOR RESIDUE CA F1292
08	AC8	SOFTWARE	ASP A:125 , LEU A:145 , GLY A:146 , ARG B:122 , LEU B:145 , SC2 B:1290 , SC2 C:1289	BINDING SITE FOR RESIDUE SC2 A1290
09	AC9	SOFTWARE	ARG B:132 , ASP B:133 , THR B:136 , LYS B:221	BINDING SITE FOR RESIDUE SC2 B1289
10	BC1	SOFTWARE	SER A:143 , LEU A:145 , SC2 A:1290 , SER B:91 , LEU B:107 , ASP B:109 , ASP B:111 , ARG B:122 , GLU B:282	BINDING SITE FOR RESIDUE SC2 B1290
11	BC2	SOFTWARE	VAL B:128 , GLY B:142 , SER B:143 , SER C:91 , ASP C:111	BINDING SITE FOR RESIDUE SC2 B1294
12	BC3	SOFTWARE	ARG A:122 , SC2 A:1290 , SER C:127 , SER C:143 , LEU C:145 , GLY C:146 , GLU C:147	BINDING SITE FOR RESIDUE SC2 C1289
13	BC4	SOFTWARE	ARG C:132 , ASP C:133 , THR C:136 , LYS C:221	BINDING SITE FOR RESIDUE SC2 C1290
14	BC5	SOFTWARE	SER D:91 , GLY D:92 , TRP D:93 , ARG F:144 , LEU F:145	BINDING SITE FOR RESIDUE SC2 D1290
15	BC6	SOFTWARE	ASP E:129 , ARG E:132 , ASP E:133 , THR E:136 , LYS E:221	BINDING SITE FOR RESIDUE SC2 E1289
16	BC7	SOFTWARE	SER D:143 , LEU D:145 , ASP E:109 , ARG E:122 , GLU E:282 , SC2 E:1291	BINDING SITE FOR RESIDUE SC2 E1290
17	BC8	SOFTWARE	ASP D:125 , LEU D:145 , GLY D:146 , ARG E:122 , LEU E:145 , SC2 E:1290 , SC2 F:1289 , HOH F:2012	BINDING SITE FOR RESIDUE SC2 E1291
18	BC9	SOFTWARE	ARG D:122 , SC2 E:1291 , SER F:127 , SER F:143 , LEU F:145 , GLY F:146 , GLU F:147 , HOH F:2012	BINDING SITE FOR RESIDUE SC2 F1289
19	CC1	SOFTWARE	ARG F:132 , ASP F:133 , THR F:136 , LYS F:221	BINDING SITE FOR RESIDUE SC2 F1290
20	CC2	SOFTWARE	GLY E:142 , SER E:143 , SER F:91 , ASP F:109 , ASP F:111 , GLU F:282	BINDING SITE FOR RESIDUE SC2 F1291
21	CC3	SOFTWARE	ASN B:215 , GLY C:260 , ASN C:275 , HOH C:2013	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1292 THROUGH NAG B1293 BOUND TO ASN B 215
22	CC4	SOFTWARE	ASN E:215 , GLY F:260 , PHE F:262 , ASN F:275	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E1293 THROUGH NAG E1294 BOUND TO ASN E 215

Asymmetric Unit

No.	Residues
1	A:80	-	A:108
2	A:232	-	A:245
3	B:73	-	B:101
4	B:80	-	B:108
5	B:232	-	B:245
6	C:80	-	C:108
7	C:232	-	C:245
8	D:80	-	D:108
9	D:232	-	D:245
10	E:73	-	E:101
11	E:80	-	E:108
12	E:232	-	E:245
13	F:80	-	F:108
14	F:232	-	F:245

Asymmetric Unit

No.	Residues
1	Asn A:244	-	Cys A:245
2	Asn B:244	-	Cys B:245
3	Asn C:244	-	Cys C:245
4	Asn D:244	-	Cys D:245
5	Asn E:244	-	Cys E:245
6	Asn F:244	-	Cys F:245

Asymmetric Unit (4, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049072	H	113	Y	FCN2_HUMAN	Polymorphism	17549179	A/B/C/D/E/F	H	88	Y
2	UniProt	VAR_049073	G	117	S	FCN2_HUMAN	Polymorphism	12684476	A/B/C/D/E/F	G	92	S
3	UniProt	VAR_049074	T	236	M	FCN2_HUMAN	Polymorphism	17549193	A/B/C/D/E/F	T	211	M
4	UniProt	VAR_049075	A	258	S	FCN2_HUMAN	Polymorphism	7851696	A/B/C/D/E/F	A	233	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (4, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049072	H	113	Y	FCN2_HUMAN	Polymorphism	17549179	A/B/C	H	88	Y
2	UniProt	VAR_049073	G	117	S	FCN2_HUMAN	Polymorphism	12684476	A/B/C	G	92	S
3	UniProt	VAR_049074	T	236	M	FCN2_HUMAN	Polymorphism	17549193	A/B/C	T	211	M
4	UniProt	VAR_049075	A	258	S	FCN2_HUMAN	Polymorphism	7851696	A/B/C	A	233	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (4, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049072	H	113	Y	FCN2_HUMAN	Polymorphism	17549179	D/E/F	H	88	Y
2	UniProt	VAR_049073	G	117	S	FCN2_HUMAN	Polymorphism	12684476	D/E/F	G	92	S
3	UniProt	VAR_049074	T	236	M	FCN2_HUMAN	Polymorphism	17549193	D/E/F	T	211	M
4	UniProt	VAR_049075	A	258	S	FCN2_HUMAN	Polymorphism	7851696	D/E/F	A	233	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FIBRINOGEN_C_2	PS51406	Fibrinogen C-terminal domain profile.	FCN2_HUMAN	96-313	2	B:72-288 E:72-288
2	FIBRINOGEN_C_1	PS00514	Fibrinogen C-terminal domain signature.	FCN2_HUMAN	265-277	6	A:240-252 B:240-252 C:240-252 D:240-252 E:240-252 F:240-252

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FIBRINOGEN_C_2	PS51406	Fibrinogen C-terminal domain profile.	FCN2_HUMAN	96-313	1	B:72-288 -
2	FIBRINOGEN_C_1	PS00514	Fibrinogen C-terminal domain signature.	FCN2_HUMAN	265-277	3	A:240-252 B:240-252 C:240-252 - - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FIBRINOGEN_C_2	PS51406	Fibrinogen C-terminal domain profile.	FCN2_HUMAN	96-313	1	- E:72-288
2	FIBRINOGEN_C_1	PS00514	Fibrinogen C-terminal domain signature.	FCN2_HUMAN	265-277	3	- - - D:240-252 E:240-252 F:240-252

Asymmetric Unit (5, 28)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000291744	1b	ENSE00001890733	chr9:137772658-137772767	110	FCN2_HUMAN	1-34	34	0	-	-
1.2	ENST00000291744	2	ENSE00001051605	chr9:137774372-137774485	114	FCN2_HUMAN	34-72	39	0	-	-
1.3a	ENST00000291744	3a	ENSE00001051599	chr9:137775148-137775201	54	FCN2_HUMAN	72-90	19	0	-	-
1.4	ENST00000291744	4	ENSE00001247525	chr9:137776586-137776618	33	FCN2_HUMAN	90-101	12	4	A:75-76 B:71-76 - D:75-76 E:71-76 -	2 6 - 2 6 -
1.5	ENST00000291744	5	ENSE00001643405	chr9:137777085-137777212	128	FCN2_HUMAN	101-143	43	6	A:76-118 B:76-118 C:77-118 D:76-118 E:76-118 F:77-118	43 43 42 43 43 42
1.6	ENST00000291744	6	ENSE00001786911	chr9:137777614-137777743	130	FCN2_HUMAN	144-187	44	6	A:119-162 B:119-162 C:119-162 D:119-162 E:119-162 F:119-162	44 44 44 44 44 44
1.7	ENST00000291744	7	ENSE00001656900	chr9:137778276-137778410	135	FCN2_HUMAN	187-232	46	6	A:162-207 B:162-207 C:162-207 D:162-207 E:162-207 F:162-207	46 46 46 46 46 46
1.8a	ENST00000291744	8a	ENSE00001941356	chr9:137779014-137779366	353	FCN2_HUMAN	232-313	82	6	A:207-288 B:207-288 C:207-288 D:207-288 E:207-288 F:207-288	82 82 82 82 82 82

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:214
 aligned with FCN2_HUMAN | Q15485 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:214
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309    
           FCN2_HUMAN   100 TGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 313
               SCOP domains d2j2pa_ A: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains 2j2pA01 A:75-206,A:280-288 Gamma Fibrinogen, chain A, domain 1                                                                      2j2pA02 A:207-279 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2  2j2pA01   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh.....eeee.........eeeee.hhhhh.eeeeeee.........hhhhhhhhee.....ee.hhhhhhhhhh...eeeeeeee.....eeeee...eee........eee...........hhhhh................hhhhhh...........ee.......ee........eehhhhh..ee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------Y---S----------------------------------------------------------------------------------------------------------------------M---------------------S------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FIBRINOGEN_C_2  PDB: - UniProt: 96-313                                                                                                                                                                                 PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------ PROSITE (2)
           Transcript 1 (1) 1.------------------------------------------Exon 1.6  PDB: A:119-162 UniProt: 144-187   --------------------------------------------Exon 1.8a  PDB: A:207-288 UniProt: 232-313                                         Transcript 1 (1)
           Transcript 1 (2) -Exon 1.5  PDB: A:76-118 UniProt: 101-143   -------------------------------------------Exon 1.7  PDB: A:162-207 UniProt: 187-232     --------------------------------------------------------------------------------- Transcript 1 (2)
                 2j2p A  75 TGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 288
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Chain B from PDB  Type:PROTEIN  Length:218
 aligned with FCN2_HUMAN | Q15485 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:218
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305        
           FCN2_HUMAN    96 QPCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 313
               SCOP domains d2j2pb_ B: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains 2j2pB01 B:71-206,B:280-288 Gamma Fibrinogen, chain A, domain 1                                                                          2j2pB02 B:207-279 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2  2j2pB01   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..hhhhhhhh.....eeeeee.....eeeeeee.......eeeeeee.........hhhhhhhhee.....ee.hhhhhhhhhh...eeeeeeee.....eeeeee..eee.hhhhh..eee..eee......hhhhh................hhhhhh...........ee.......ee........eehhhhh..ee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------Y---S----------------------------------------------------------------------------------------------------------------------M---------------------S------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FIBRINOGEN_C_2  PDB: B:72-288 UniProt: 96-313                                                                                                                                                                              PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------ PROSITE (2)
           Transcript 1 (1) 1.4   ------------------------------------------Exon 1.6  PDB: B:119-162 UniProt: 144-187   --------------------------------------------Exon 1.8a  PDB: B:207-288 UniProt: 232-313                                         Transcript 1 (1)
           Transcript 1 (2) -----Exon 1.5  PDB: B:76-118 UniProt: 101-143   -------------------------------------------Exon 1.7  PDB: B:162-207 UniProt: 187-232     --------------------------------------------------------------------------------- Transcript 1 (2)
                 2j2p B  71 NPCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 288
                                    80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Chain C from PDB  Type:PROTEIN  Length:212
 aligned with FCN2_HUMAN | Q15485 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:212
                                   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311  
           FCN2_HUMAN   102 PRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 313
               SCOP domains d2j2pc_ C: automated matches                                                                                                                                                                                         SCOP domains
               CATH domains 2j2pC01 C:77-206,C:280-288 Gamma Fibrinogen, chain A, domain 1                                                                    2j2pC02 C:207-279 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2  2j2pC01   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh.....eeeeee.....eeeeeee.hhhhh.eeeeeee.........hhhhhhhhee.....ee.hhhhhhhhh....eeeeeeee.....eeeeee..eee.hhhhh..eee..eee......hhhhh................hhhhhh....................ee.................ee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------Y---S----------------------------------------------------------------------------------------------------------------------M---------------------S------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FIBRINOGEN_C_2  PDB: - UniProt: 96-313                                                                                                                                                                               PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------ PROSITE (2)
           Transcript 1 (1) ------------------------------------------Exon 1.6  PDB: C:119-162 UniProt: 144-187   --------------------------------------------Exon 1.8a  PDB: C:207-288 UniProt: 232-313                                         Transcript 1 (1)
           Transcript 1 (2) Exon 1.5  PDB: C:77-118 UniProt: 101-143  -------------------------------------------Exon 1.7  PDB: C:162-207 UniProt: 187-232     --------------------------------------------------------------------------------- Transcript 1 (2)
                 2j2p C  77 PRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 288
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286

Chain D from PDB  Type:PROTEIN  Length:214
 aligned with FCN2_HUMAN | Q15485 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:214
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309    
           FCN2_HUMAN   100 TGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 313
               SCOP domains d2j2pd_ D: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains 2j2pD01 D:75-206,D:280-288 Gamma Fibrinogen, chain A, domain 1                                                                      2j2pD02 D:207-279 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2  2j2pD01   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh.....eeeeee.....eeeeeee.hhhhh.eeeeeee.........hhhhhhhhee.....ee.hhhhhhhhhh................eeeeeeeeeee........eee..eee......hhhhh................hhhhhh...........ee.......ee........eehhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) -------------Y---S----------------------------------------------------------------------------------------------------------------------M---------------------S------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FIBRINOGEN_C_2  PDB: - UniProt: 96-313                                                                                                                                                                                 PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------ PROSITE (2)
           Transcript 1 (1) 1.------------------------------------------Exon 1.6  PDB: D:119-162 UniProt: 144-187   --------------------------------------------Exon 1.8a  PDB: D:207-288 UniProt: 232-313                                         Transcript 1 (1)
           Transcript 1 (2) -Exon 1.5  PDB: D:76-118 UniProt: 101-143   -------------------------------------------Exon 1.7  PDB: D:162-207 UniProt: 187-232     --------------------------------------------------------------------------------- Transcript 1 (2)
                 2j2p D  75 TGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 288
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Chain E from PDB  Type:PROTEIN  Length:218
 aligned with FCN2_HUMAN | Q15485 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:218
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305        
           FCN2_HUMAN    96 QPCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 313
               SCOP domains d2j2pe_ E: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains 2j2pE01 E:71-206,E:280-288 Gamma Fibrinogen, chain A, domain 1                                                                          2j2pE02 E:207-279 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2  2j2pE01   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..hhhhhhhh.....eeeeee.....eeeeeee.......eeeeeee.........hhhhhhhhee.....ee.hhhhhhhhhh...eeeeeeee.....eeeeee..eee.hhhhh..eee..eee......hhhhh................hhhhhh...........ee.......ee........eehhhhh..ee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------------Y---S----------------------------------------------------------------------------------------------------------------------M---------------------S------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FIBRINOGEN_C_2  PDB: E:72-288 UniProt: 96-313                                                                                                                                                                              PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------ PROSITE (2)
           Transcript 1 (1) 1.4   ------------------------------------------Exon 1.6  PDB: E:119-162 UniProt: 144-187   --------------------------------------------Exon 1.8a  PDB: E:207-288 UniProt: 232-313                                         Transcript 1 (1)
           Transcript 1 (2) -----Exon 1.5  PDB: E:76-118 UniProt: 101-143   -------------------------------------------Exon 1.7  PDB: E:162-207 UniProt: 187-232     --------------------------------------------------------------------------------- Transcript 1 (2)
                 2j2p E  71 NPCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 288
                                    80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Chain F from PDB  Type:PROTEIN  Length:212
 aligned with FCN2_HUMAN | Q15485 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:212
                                   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311  
           FCN2_HUMAN   102 PRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 313
               SCOP domains d2j2pf_ F: automated matches                                                                                                                                                                                         SCOP domains
               CATH domains 2j2pF01 F:77-206,F:280-288 Gamma Fibrinogen, chain A, domain 1                                                                    2j2pF02 F:207-279 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2  2j2pF01   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh.....eeeeee.....eeeeeee.hhhhh.eeeeeee.........hhhhhhhhee.....ee.hhhhhhhhhh...eeeeeeee.....eeeeee..eee.hhhhh..eee...........hhhhh................hhhhhh....................ee.................ee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -----------Y---S----------------------------------------------------------------------------------------------------------------------M---------------------S------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FIBRINOGEN_C_2  PDB: - UniProt: 96-313                                                                                                                                                                               PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------ PROSITE (2)
           Transcript 1 (1) ------------------------------------------Exon 1.6  PDB: F:119-162 UniProt: 144-187   --------------------------------------------Exon 1.8a  PDB: F:207-288 UniProt: 232-313                                         Transcript 1 (1)
           Transcript 1 (2) Exon 1.5  PDB: F:77-118 UniProt: 101-143  -------------------------------------------Exon 1.7  PDB: F:162-207 UniProt: 187-232     --------------------------------------------------------------------------------- Transcript 1 (2)
                 2j2p F  77 PRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA 288
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Fibrinogen C-terminal domain-like (70)

Superfamily: Fibrinogen C-terminal domain-like (70)

Family: automated matches (27)

Protein domain: automated matches (27)

Human (Homo sapiens) [TaxId: 9606] (27)

1a	d2j2pa_	A:
1b	d2j2pb_	B:
1c	d2j2pc_	C:
1d	d2j2pd_	D:
1e	d2j2pe_	E:
1f	d2j2pf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Gamma Fibrinogen; Chain A, domain 1 (58)

Homologous Superfamily: Gamma Fibrinogen, chain A, domain 1 (58)

Human (Homo sapiens) (53)

1a	2j2pB01	B:71-206,B:280-288
1b	2j2pE01	E:71-206,E:280-288
1c	2j2pA01	A:75-206,A:280-288
1d	2j2pD01	D:75-206,D:280-288
1e	2j2pC01	C:77-206,C:280-288
1f	2j2pF01	F:77-206,F:280-288

Class: Few Secondary Structures (1120)

Architecture: Irregular (1120)

Topology: Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 (58)

Homologous Superfamily: Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 (58)

Human (Homo sapiens) (53)

2a	2j2pA02	A:207-279
2b	2j2pB02	B:207-279
2c	2j2pC02	C:207-279
2d	2j2pD02	D:207-279
2e	2j2pE02	E:207-279
2f	2j2pF02	F:207-279

(no "Pfam Domain" information available for 2J2P)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (FCN2_HUMAN | Q15485)

molecular function
	GO:0003823	antigen binding	Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.
	GO:0048306	calcium-dependent protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:2001065	mannan binding	Interacting selectively and non-covalently with mannan.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0043394	proteoglycan binding	Interacting selectively and non-covalently with a proteoglycan, any glycoprotein in which the carbohydrate units are glycosaminoglycans.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006956	complement activation	Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
	GO:0001867	complement activation, lectin pathway	Any process involved in the activation of any of the steps of the lectin pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
	GO:0050829	defense response to Gram-negative bacterium	Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
	GO:0050830	defense response to Gram-positive bacterium	Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0008228	opsonization	The process in which a microorganism (or other particulate material) is rendered more susceptible to phagocytosis by coating with an opsonin, a blood serum protein such as a complement component or antibody.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0043654	recognition of apoptotic cell	The process in which a cell interprets signals (in the form of specific proteins and lipids) on the surface of a dying cell which it will engulf and remove by phagocytosis.
cellular component
	GO:0072562	blood microparticle	A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
	GO:0005581	collagen trimer	A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	2j2p
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	FCN2_HUMAN \| Q15485
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UniProtKB/Swiss-Prot
	FCN2_HUMAN \| Q15485	:	2j0g 2j0h 2j0y 2j1g 2j3f 2j3g 2j3o 2j3u 2j61 4nyt 4r9j 4r9t

2j0g	L-FICOLIN COMPLEXED TO N-ACETYL-MANNOSAMINE
2j0h	L-FICOLIN COMPLEXED TO ACETYL-CHOLINE
2j0y	L-FICOLIN COMPLEXED TO B-1,3-D-GLUCAN
2j1g	L-FICOLIN COMPLEXED TO N-ACETYL-CYSTEIN
2j3f	L-FICOLIN COMPLEXED TO N-ACETYL-D- GALACTOSAMIN
2j3g	L-FICOLIN
2j3o	L-FICOLIN COMPLEXED TO N-ACETYL-D- GLUCOSAMIN
2j3u	L-FICOLIN COMPLEXED TO GALACTOSE
2j61	L-FICOLIN COMPLEXED TO N-ACETYLGLUCOSAMINE ( FORME C)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 24)

Sites (22, 22)

SS Bonds (14, 14)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (4, 24)

PROSITE Motifs (2, 8)

Exons (5, 28)

Sequences/Alignments

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SCOP Domains (1, 6)

CATH Domains (2, 12)

Pfam Domains (0, 0)

Gene Ontology (21, 21)

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