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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SIALYLTRANSFERASE PM0188 WITH CMP-3FNEUAC AND LACTOSE
 
Authors :  D. U. Kim, H. S. Cho
Date :  13 Jul 06  (Deposition) - 18 Sep 07  (Release) - 06 Oct 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Pm0188, Sialyltransferase, Cmp-3Fneuac, Lactose, Hypothetical Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. U. Kim, J. H. Yoo, Y. J. Lee, K. S. Kim, H. S. Cho
Structural Analysis Of Sialyltransferase Pm0188 From Pasteurella Multocida Complexed With Donor Analogue And Acceptor Sugar.
Bmb Rep. V. 41 48 2008
PubMed-ID: 18304450

(-) Compounds

Molecule 1 - PROTEIN PM0188
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET15B
    Organism Scientific: PASTEURELLA MULTOCIDA
    Organism Taxid: 747
    Synonym: SIALYLTRANSFERASE PM0188

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1CSF1Ligand/IonCYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID
2LAT1Ligand/IonBETA-LACTOSE
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:34 , ARG A:63 , HIS A:112 , ASP A:141 , MSE A:144 , TRP A:270 , ARG A:313 , CSF A:1415 , HOH A:2028 , HOH A:2096 , HOH A:2127 , HOH A:2128BINDING SITE FOR RESIDUE LAT A1414
2AC2SOFTWARESER A:36 , LEU A:37 , ARG A:63 , ASP A:141 , GLY A:142 , SER A:143 , MSE A:144 , GLY A:266 , THR A:268 , TRP A:270 , LYS A:309 , GLY A:310 , HIS A:311 , PRO A:312 , ILE A:335 , SER A:336 , PHE A:337 , GLU A:338 , SER A:355 , SER A:356 , LEU A:357 , LAT A:1414 , HOH A:2005 , HOH A:2129BINDING SITE FOR RESIDUE CSF A1415

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IY8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2IY8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IY8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2IY8)

(-) Exons   (0, 0)

(no "Exon" information available for 2IY8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:377
 aligned with Q9CP67_PASMU | Q9CP67 from UniProtKB/TrEMBL  Length:412

    Alignment length:389
                                                                                                                                                                                                                                                                                                                                                                                                                             412 
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       | 
         Q9CP67_PASMU    25 SKTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELDIHLNIAHSVQLIRPILAYRFKHLDRVSIQRLNLYDDGSMEYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIARYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIFTGTTTWEGNTDVREYYAQQQLNLLNHFTQAGGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGLLPDKVGGVASSLYFSLPKEKISHIIFTSNKQVKSKEDALNNPYVKVMRRLGIIDESQVIFWDSLKQL-   -
               SCOP domains d2iy8a_ A: Alpha-2,3/2,6-sialyltransferase/sialidase                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhh........eeeee.....hhhhhh....eee.........hhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhh....eeeeeeeee...hhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh..eeeee.hhhhhhhh..hhhhhhhhh..eee.........hhhhhhhhhhhh..hhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhh...........eeeee.....hhhhhhhhhhh..eee......hhhhhhh.....eeeee.hhhhhh.hhh.eeeeee.------------.hhhhhhhhhh........ee.hhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iy8 A  25 SKTITLYLDPASLPALNQLmDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELNIHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSmEYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIARYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKmDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIFTGTTTWEGNTEVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLmmTGLLPDKVGGVASSLYFSLPKEKISHIIFT------------NNPYVKVmRRLGIIDESQVIFWDSLKELG 413
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224|      234       244       254       264       274       284       294       304       314       324       334      |344       354       364       | -         -|      394       404         
                                              44-MSE                                                                                             144-MSE                                                                          225-MSE                                                                                                             341-MSE                        372          385      |                     
                                                                                                                                                                                                                                                                                                                                                       342-MSE                                           392-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2IY8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IY8)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2IY8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9CP67_PASMU | Q9CP67: 2c83

(-) Related Entries Specified in the PDB File

2c83 STRUCTURAL ANALYSIS OF THE ALPHA-2,6- SIALYLTRANSFERASE PM0188
2c84 ALPHA-2,6-SIALYLTRANSFERASE PM0188 WITH CMP
2ex0 CRYSTAL STRUCTURE OF MULTIFUNCTIONAL SIALYLTRANSFERASE FROMPASTEURELLA MULTOCIDA
2ex1 CRYSTAL STRUCTURE OF MUTIFUNCTIONAL SIALYLTRANSFERASE FROMPASTEURELLA MULTOCIDA WITH CMP BOUND
2iy7 CRYSTAL STRUCTURE OF THE SIALYLTRANSFERASE PM0188 WITH CMP-3FNEUAC