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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN XCC0632 FROM XANTHOMONAS CAMPESTRIS, PFAM DUF330
 
Authors :  J. B. Bonanno, J. Gilmore, K. T. Bain, C. Mckenzie, L. Pelletier, S. Wasserman, S. K. Burley, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  13 Oct 06  (Deposition) - 07 Nov 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Structural Genomics, Hypothetical Protein, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. B. Bonanno, J. Gilmore, K. T. Bain, C. Mckenzie, L. Pelletier, S. Wasserman, S. K. Burley, S. C. Almo
Crystal Structure Of Hypothetical Protein Xcc0632 From Xanthomonas Campestris Pv. Campestris
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN XCC0632
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidMODIFIED PET26
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneXCC0632
    Organism ScientificXANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
    Organism Taxid340
    StrainPV. CAMPESTRIS

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A       
Biological Unit 2 (1x) B      
Biological Unit 3 (1x)  C     
Biological Unit 4 (1x)   D    
Biological Unit 5 (1x)    E   
Biological Unit 6 (1x)     F  
Biological Unit 7 (1x)      G 
Biological Unit 8 (1x)       H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2IQI)

(-) Sites  (0, 0)

(no "Site" information available for 2IQI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IQI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2IQI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IQI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2IQI)

(-) Exons   (0, 0)

(no "Exon" information available for 2IQI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:173
 aligned with Q8PCT0_XANCP | Q8PCT0 from UniProtKB/TrEMBL  Length:214

    Alignment length:178
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201        
         Q8PCT0_XANCP    32 ATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
               SCOP domains d2iqia1 A:32-209 Hypothetical protein XCC0632                                                                                                                                      SCOP domains
               CATH domains 2iqiA00 A:32-209 XCC0632-like                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.................eeee..............eee......ee...eee..hhhhhhhhhhhhhhhh.....eee..-----..eeeeeeeeeeeee.......eeeeeeeeeeee....eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iqi A  32 ATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI-----SDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
                                    41        51        61        71        81        91       101       111   |   121       131       141       151       161       171       181       191       201        
                                                                                                             115   121                                                                                        

Chain B from PDB  Type:PROTEIN  Length:171
 aligned with Q8PCT0_XANCP | Q8PCT0 from UniProtKB/TrEMBL  Length:214

    Alignment length:177
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       
         Q8PCT0_XANCP    33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
               SCOP domains d2iqib_ B: Hypothetical protein XCC0632                                                                                                                                           SCOP domains
               CATH domains 2iqiB00 B:33-209 XCC0632-like                                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..................eee..............eee......ee....ee..hhhhhhhhhhhhhhhhhh....ee.------..eeeeeeeeeeeee.......eeeeeeeeeeee....eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iqi B  33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVAR------SDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
                                    42        52        62        72        82        92       102       112 |     122       132       142       152       162       172       182       192       202       
                                                                                                           114    121                                                                                        

Chain C from PDB  Type:PROTEIN  Length:171
 aligned with Q8PCT0_XANCP | Q8PCT0 from UniProtKB/TrEMBL  Length:214

    Alignment length:177
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       
         Q8PCT0_XANCP    33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
               SCOP domains d2iqic_ C: Hypothetical protein XCC0632                                                                                                                                           SCOP domains
               CATH domains 2iqiC00 C:33-209 XCC0632-like                                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..................eee............eeeee......eeeeeeee..hhhhhhhhhhhhhhhhhh....ee.------..eeeeeeeeeeeee.......eeeeeeeeeeee....eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iqi C  33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVAR------SDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
                                    42        52        62        72        82        92       102       112 |     122       132       142       152       162       172       182       192       202       
                                                                                                           114    121                                                                                        

Chain D from PDB  Type:PROTEIN  Length:171
 aligned with Q8PCT0_XANCP | Q8PCT0 from UniProtKB/TrEMBL  Length:214

    Alignment length:177
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       
         Q8PCT0_XANCP    33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
               SCOP domains d2iqid_ D: Hypothetical protein XCC0632                                                                                                                                           SCOP domains
               CATH domains 2iqiD00 D:33-209 XCC0632-like                                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..................eee............eeeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhh......ee.------..eeeeeeeeeeeee.......eeeeeeeeeeee....eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iqi D  33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVAR------SDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
                                    42        52        62        72        82        92       102       112 |     122       132       142       152       162       172       182       192       202       
                                                                                                           114    121                                                                                        

Chain E from PDB  Type:PROTEIN  Length:171
 aligned with Q8PCT0_XANCP | Q8PCT0 from UniProtKB/TrEMBL  Length:214

    Alignment length:177
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       
         Q8PCT0_XANCP    33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
               SCOP domains d2iqie_ E: Hypothetical protein XCC0632                                                                                                                                           SCOP domains
               CATH domains 2iqiE00 E:33-209 XCC0632-like                                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..............eeeeeee...ee.......eeeee......eeeeeeee..hhhhhhhhhhhhhhhh...eeeee.------..eeeeeeeeeeeee.......eeeeeeeeeeee....eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iqi E  33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVAR------SDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
                                    42        52        62        72        82        92       102       112 |     122       132       142       152       162       172       182       192       202       
                                                                                                           114    121                                                                                        

Chain F from PDB  Type:PROTEIN  Length:175
 aligned with Q8PCT0_XANCP | Q8PCT0 from UniProtKB/TrEMBL  Length:214

    Alignment length:178
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201        
         Q8PCT0_XANCP    32 ATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
               SCOP domains d2iqif_ F: Hypothetical protein XCC0632                                                                                                                                            SCOP domains
               CATH domains 2iqiF00 F:32-209 XCC0632-like                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..............eeeeeee...ee.......eeeee....eeeeeeeeee..hhhhhhhhhhhhhhhh...eeeee..---....eeeeeeeeeeeee.......eeeeeeeeeeee....eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iqi F  32 ATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI---IRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
                                    41        51        61        71        81        91       101       111   |   121       131       141       151       161       171       181       191       201        
                                                                                                             115 119                                                                                          

Chain G from PDB  Type:PROTEIN  Length:172
 aligned with Q8PCT0_XANCP | Q8PCT0 from UniProtKB/TrEMBL  Length:214

    Alignment length:177
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       
         Q8PCT0_XANCP    33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
               SCOP domains d2iqig_ G: Hypothetical protein XCC0632                                                                                                                                           SCOP domains
               CATH domains 2iqiG00 G:33-209 XCC0632-like                                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..................eee............eeeee......eeeeeeee..hhhhhhhhhhhhhhhh......ee..-----..eeeeeeeeeeeee.......eeeeeeeeeeee....eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iqi G  33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI-----SDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
                                    42        52        62        72        82        92       102       112  |    122       132       142       152       162       172       182       192       202       
                                                                                                            115   121                                                                                        

Chain H from PDB  Type:PROTEIN  Length:171
 aligned with Q8PCT0_XANCP | Q8PCT0 from UniProtKB/TrEMBL  Length:214

    Alignment length:177
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       
         Q8PCT0_XANCP    33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
               SCOP domains d2iqih_ H: Hypothetical protein XCC0632                                                                                                                                           SCOP domains
               CATH domains 2iqiH00 H:33-209 XCC0632-like                                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..................eee............eeeee....eeeeeeeeee..hhhhhhhhhhhhhhhhhh....ee.------..eeeeeeeeeeeee.......eeeeeeeeeeee....eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iqi H  33 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVAR------SDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITGQQDSQT 209
                                    42        52        62        72        82        92       102       112 |     122       132       142       152       162       172       182       192       202       
                                                                                                           114    121                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a2iqiG00G:33-209
1b2iqiB00B:33-209
1c2iqiC00C:33-209
1d2iqiD00D:33-209
1e2iqiE00E:33-209
1f2iqiH00H:33-209
1g2iqiA00A:32-209
1h2iqiF00F:32-209

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IQI)

(-) Gene Ontology  (0, 0)

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