2IQ7 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE POLYGALACTURONASE FROM COLLETOTRICHUM LUPINI AND ITS IMPLICATIONS FOR THE INTERACTION WITH POLYGALACTURONASE-INHIBITING PROTEINS

Authors :   D. Bonivento, L. Federici, A. D. Matteo

Date :   13 Oct 06 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.94

Chains :   Asym. Unit : A,B,C,D,E,F,G,H^#,I^#,L^#,M^#,N^#,O^#,Q^#
Biol. Unit 1: A,H^#  (1x)
Biol. Unit 2: B,I^#  (1x)
Biol. Unit 3: C,L^#  (1x)
Biol. Unit 4: D,M^#  (1x)
Biol. Unit 5: E,N^#  (1x)
Biol. Unit 6: F,O^#  (1x)
Biol. Unit 7: G,Q^#  (1x)
( ^#: chains that contain no standard or modified protein/DNA/RNA residue)

Keywords :   Parallel Beta Helix, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Bonivento, D. Pontiggia, A. D. Matteo, J. Fernandez-Recio, G. Salvi, D. Tsernoglou, F. Cervone, G. D. Lorenzo, L. Federici
Crystal Structure Of The Endopolygalacturonase From The Phytopathogenic Fungus Colletotrichum Lupini And Its Interaction With Polygalacturonase-Inhibiting Proteins
Proteins V. 70 294 2008
PubMed-ID: 17876815 | Reference-DOI: 10.1002/PROT.21610

Molecule 1 - ENDOPOLYGALACTURONASE
	Chains	:	A, B, C, D, E, F, G
	EC Number	:	3.2.1.15
	Organism Scientific	:	COLLETOTRICHUM LUPINI
	Organism Taxid	:	145971

		1	2	3	4	5	6	7	8	9	10	11	12	13	14
Asymmetric Unit	:	A	B	C	D	E	F	G	H^#	I^#	L^#	M^#	N^#	O^#	Q^#
Biological Unit 1 (1x)	:	A							H^#
Biological Unit 2 (1x)	:		B							I^#
Biological Unit 3 (1x)	:			C							L^#
Biological Unit 4 (1x)	:				D							M^#
Biological Unit 5 (1x)	:					E							N^#
Biological Unit 6 (1x)	:						F							O^#
Biological Unit 7 (1x)	:							G							Q^#

( ^#: chains that contain no standard or modified protein/DNA/RNA residue)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 28)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	MAN	4	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	14	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	6	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 1 (3, 7)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	MAN	4	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 2 (4, 5)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 4 (2, 3)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 5 (3, 4)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 6 (3, 4)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 7 (1, 2)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PG4	-1	Ligand/Ion	TETRAETHYLENE GLYCOL

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:156 , GLY A:187 , TYR A:189 , ASN A:209 , PG4 E:3001 , NAG H:364 , HOH H:372	BINDING SITE FOR RESIDUE NAG H 363
02	AC2	SOFTWARE	THR A:156 , TYR A:160 , TYR A:189 , HOH A:3115 , ASN E:334 , PG4 E:3001 , HOH E:3298 , NAG H:363 , MAN H:365 , HOH H:373 , HOH H:379 , HOH H:384 , HOH H:386	BINDING SITE FOR RESIDUE NAG H 364
03	AC3	SOFTWARE	ASN E:334 , TRP E:335 , SER E:356 , GLY E:357 , PG4 E:3001 , NAG H:364 , MAN H:366 , MAN H:367 , HOH H:371 , HOH H:375 , HOH H:381 , HOH H:382	BINDING SITE FOR RESIDUE MAN H 365
04	AC4	SOFTWARE	LYS E:336 , GLY E:357 , SER E:358 , MAN H:365 , MAN H:368 , HOH H:370 , HOH H:385	BINDING SITE FOR RESIDUE MAN H 366
05	AC5	SOFTWARE	ASN A:92 , SER E:356 , GLY E:357 , HOH E:3367 , MAN H:365 , HOH H:377	BINDING SITE FOR RESIDUE MAN H 367
06	AC6	SOFTWARE	TRP E:337 , SER E:338 , SER E:358 , MAN H:366 , HOH H:380 , HOH H:387	BINDING SITE FOR RESIDUE MAN H 368
07	AC7	SOFTWARE	THR B:156 , GLY B:187 , ASN B:209 , HOH G:400 , NAG I:364 , HOH I:365 , HOH I:366 , HOH I:367 , HOH I:370	BINDING SITE FOR RESIDUE NAG I 363
08	AC8	SOFTWARE	TYR B:160 , HOH B:3270 , SER G:232 , NAG I:363 , HOH I:367 , HOH I:368 , HOH I:370	BINDING SITE FOR RESIDUE NAG I 364
09	AC9	SOFTWARE	GLY C:187 , ASN C:209 , HOH C:3030 , NAG L:364 , HOH L:365 , HOH L:366	BINDING SITE FOR RESIDUE NAG L 363
10	BC1	SOFTWARE	TYR C:160 , TYR C:189 , NAG L:363 , HOH L:367 , HOH L:368	BINDING SITE FOR RESIDUE NAG L 364
11	BC2	SOFTWARE	HOH C:3342 , THR D:156 , GLY D:187 , TYR D:189 , ASN D:209 , HOH D:3056 , NAG M:364 , HOH M:365 , HOH M:367 , HOH M:369	BINDING SITE FOR RESIDUE NAG M 363
12	BC3	SOFTWARE	TYR D:189 , HOH D:3204 , NAG M:363 , HOH M:366 , HOH M:368 , HOH M:369	BINDING SITE FOR RESIDUE NAG M 364
13	BC4	SOFTWARE	THR E:156 , GLY E:187 , TYR E:189 , ASN E:209 , HOH E:3123 , NAG N:364 , HOH N:365 , HOH N:366 , HOH N:370 , HOH N:372	BINDING SITE FOR RESIDUE NAG N 363
14	BC5	SOFTWARE	LYS A:336 , HOH E:3060 , NAG N:363 , HOH N:367 , HOH N:368 , HOH N:370 , HOH N:371	BINDING SITE FOR RESIDUE NAG N 364
15	BC6	SOFTWARE	THR F:156 , GLY F:187 , TYR F:189 , ASN F:209 , HOH F:3095 , NAG O:364 , HOH O:365 , HOH O:366 , HOH O:367	BINDING SITE FOR RESIDUE NAG O 363
16	BC7	SOFTWARE	TYR F:160 , NAG O:363	BINDING SITE FOR RESIDUE NAG O 364
17	BC8	SOFTWARE	GLY G:187 , ASN G:209 , NAG Q:364 , HOH Q:365	BINDING SITE FOR RESIDUE NAG Q 363
18	BC9	SOFTWARE	HOH B:3079 , TYR G:160 , TYR G:189 , NAG Q:363 , HOH Q:365 , HOH Q:366	BINDING SITE FOR RESIDUE NAG Q 364
19	CC1	SOFTWARE	SER E:266 , GLY E:267 , THR E:305 , GLY E:306 , THR E:308 , ASN E:334 , HOH E:3229 , HOH E:3236 , HOH E:3250 , HOH E:3296 , HOH E:3298 , NAG H:363 , NAG H:364 , MAN H:365	BINDING SITE FOR RESIDUE PG4 E 3001
20	CC2	SOFTWARE	LYS C:137 , TYR C:160 , LYS C:347 , SER C:348 , HOH C:3245	BINDING SITE FOR RESIDUE PG4 C 3002
21	CC3	SOFTWARE	LYS A:347 , SER A:348 , ASN B:94 , ASN B:135 , LYS B:137	BINDING SITE FOR RESIDUE PG4 B 3003
22	CC4	SOFTWARE	THR A:121 , HOH A:3273 , LEU C:307 , THR C:308 , ASN C:334 , LYS C:336	BINDING SITE FOR RESIDUE PG4 A 3004
23	CC5	SOFTWARE	GLU C:82 , ASN C:117 , GLY C:118 , HOH C:3303 , HOH C:3369 , TYR F:78 , ARG F:109 , HOH F:3261 , HOH F:3289	BINDING SITE FOR RESIDUE PG4 F 3005
24	CC6	SOFTWARE	GLY D:215 , ASN D:243 , LYS D:245 , THR D:274 , HOH D:3180	BINDING SITE FOR RESIDUE PG4 D 3006
25	CC7	SOFTWARE	GLY E:263 , ASN E:300 , GLY E:301 , HOH E:3374 , TYR F:127 , HIS F:129 , ASN F:152 , PEG F:3009 , HOH F:3253	BINDING SITE FOR RESIDUE PEG E 3007
26	CC8	SOFTWARE	ASN B:300 , GLY B:301 , HOH B:3195 , HOH B:3315 , SER E:113 , HIS E:175	BINDING SITE FOR RESIDUE PEG B 3008
27	CC9	SOFTWARE	PEG E:3007 , LYS F:124 , TYR F:127 , GLN F:147 , SER F:150 , ASP F:181	BINDING SITE FOR RESIDUE PEG F 3009
28	DC1	SOFTWARE	LYS B:245 , VAL B:247 , SER B:276 , HOH B:3292 , LYS C:245 , VAL C:247 , SER C:276	BINDING SITE FOR RESIDUE ACY B 3010

Asymmetric Unit

No.	Residues
1	A:26	-	A:41
2	A:201	-	A:217
3	A:327	-	A:332
4	A:351	-	A:362
5	B:26	-	B:41
6	B:201	-	B:217
7	B:327	-	B:332
8	B:351	-	B:362
9	C:26	-	C:41
10	C:201	-	C:217
11	C:327	-	C:332
12	C:351	-	C:362
13	D:26	-	D:41
14	D:201	-	D:217
15	D:327	-	D:332
16	D:351	-	D:362
17	E:26	-	E:41
18	E:201	-	E:217
19	E:327	-	E:332
20	E:351	-	E:362
21	F:26	-	F:41
22	F:201	-	F:217
23	F:327	-	F:332
24	F:351	-	F:362
25	G:26	-	G:41
26	G:201	-	G:217
27	G:327	-	G:332
28	G:351	-	G:362

Asymmetric Unit

No.	Residues
1	Gly A:83	-	Pro A:84
2	Gly A:226	-	Ser A:227
3	Gly B:83	-	Pro B:84
4	Gly B:226	-	Ser B:227
5	Gly C:83	-	Pro C:84
6	Gly C:226	-	Ser C:227
7	Gly D:83	-	Pro D:84
8	Gly D:226	-	Ser D:227
9	Gly E:83	-	Pro E:84
10	Gly E:226	-	Ser E:227
11	Gly F:83	-	Pro F:84
12	Gly F:226	-	Ser F:227
13	Gly G:83	-	Pro G:84
14	Gly G:226	-	Ser G:227

(no "SAP(SNP)/Variant" information available for 2IQ7)

(no "PROSITE Motif" information available for 2IQ7)

(no "Exon" information available for 2IQ7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:339
 aligned with A1E266_9PEZI | A1E266 from UniProtKB/TrEMBL  Length:362

    Alignment length:339
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353         
         A1E266_9PEZI    24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
               SCOP domains d2iq7a_ A: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2iq7A00 A:24-362 Single-stranded right-handed beta-helix, Pectin lyase-like                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhh.eeeee..ee.....eee.......eeeee.eeee.........eeeeee..eeee....eee.hhhhh...hhhhh.......eeeeeeeeeeee..eee......eeee..eeeeee..eee.hhhhhh.......eeee..eeeeee..eee.....eee..eeeeeee..eee....eeeeee......eeeeeeeeeeeee...eeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeee..ee.........eeeeeeeeeeeee....eeeeee.....eeeeeeeeeeee................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iq7 A  24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353

Chain B from PDB  Type:PROTEIN  Length:339
 aligned with A1E266_9PEZI | A1E266 from UniProtKB/TrEMBL  Length:362

    Alignment length:339
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353         
         A1E266_9PEZI    24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
               SCOP domains d2iq7b_ B: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2iq7B00 B:24-362 Single-stranded right-handed beta-helix, Pectin lyase-like                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhh.eeeee..ee.....eee.......eeeee.eeee.........eeeeee..eeee....eee.hhhhh...hhhhh.......eeeeeeeeeeee..eee......eeee..eeeeee..eee.hhhhhh.......eeee..eeeeee..eee.....eee..eeeeeee..eee....eeeeee......eeeeeeeeeeeee...eeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeee..ee.........eeeeeeeeeeeee....eeeeee.....eeeeeeeeeeee................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iq7 B  24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353

Chain C from PDB  Type:PROTEIN  Length:339
 aligned with A1E266_9PEZI | A1E266 from UniProtKB/TrEMBL  Length:362

    Alignment length:339
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353         
         A1E266_9PEZI    24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
               SCOP domains d2iq7c_ C: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2iq7C00 C:24-362 Single-stranded right-handed beta-helix, Pectin lyase-like                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhh.eeeee..ee.....eee.......eeeee.eeee.........eeeeee..eeee....eee.hhhhh...hhhhh.......eeeeeeeeeeee..eee......eeee..eeeeee..eee.hhhhh........eeee..eeeeee..eee.....eee..eeeeeee..eee....eeeeee......eeeeeeeeeeeee...eeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeee..ee.........eeeeeeeeeeeee....eeeeee.....eeeeeeeeeeee................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iq7 C  24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353

Chain D from PDB  Type:PROTEIN  Length:339
 aligned with A1E266_9PEZI | A1E266 from UniProtKB/TrEMBL  Length:362

    Alignment length:339
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353         
         A1E266_9PEZI    24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
               SCOP domains d2iq7d_ D: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2iq7D00 D:24-362 Single-stranded right-handed beta-helix, Pectin lyase-like                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhh.eeeee..ee.....eee.......eeeee.eeee.........eeeeee..eeee....eee.hhhhh...............eeeeeeeeeeee..eee......eeee..eeeeee..eee.hhhhh........eeee..eeeeee..eee.....eee..eeeeeee..eee....eeeeee......eeeeeeeeeeeee...eeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeee..ee.........eeeeeeeeeeeee....eeeeee.....eeeeeeeeeeee................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iq7 D  24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353

Chain E from PDB  Type:PROTEIN  Length:339
 aligned with A1E266_9PEZI | A1E266 from UniProtKB/TrEMBL  Length:362

    Alignment length:339
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353         
         A1E266_9PEZI    24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
               SCOP domains d2iq7e_ E: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2iq7E00 E:24-362 Single-stranded right-handed beta-helix, Pectin lyase-like                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhh.eeeee..ee.....eee.......eeeee.eeee.........eeeeee..eeee....eee.hhhhh...hhhhh.......eeeeeeeeeeee..eee......eeee..eeeeee..eee..hhhhhh......eeee..eeeeee..eee.....eee..eeeeeee..eee....eeeeee......eeeeeeeeeeeee...eeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeee..ee.........eeeeeeeeeeeee....eeeeee.....eeeeeeeeeeee................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iq7 E  24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353

Chain F from PDB  Type:PROTEIN  Length:338
 aligned with A1E266_9PEZI | A1E266 from UniProtKB/TrEMBL  Length:362

    Alignment length:338
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354        
         A1E266_9PEZI    25 SCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
               SCOP domains d2iq7f_ F: automated matches                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 2iq7F00 F:25-362 Single-stranded right-handed beta-helix, Pectin lyase-like                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh.eeeee..ee.....eee.......eeeee.eeee.........eeeeee..eeee....eee.hhhhh...hhhhh.......eeeeeeeeeeee..eee......eeee..eeeeee..eee.hhhhh........eeee..eeeeee..eee.....eee..eeeeeee..eee....eeeeee......eeeeeeeeeeeee...eeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeee..ee.........eeeeeeeeeeeee....eeeeee.....eeeeeeeeeeee................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iq7 F  25 SCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354

Chain G from PDB  Type:PROTEIN  Length:339
 aligned with A1E266_9PEZI | A1E266 from UniProtKB/TrEMBL  Length:362

    Alignment length:339
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353         
         A1E266_9PEZI    24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
               SCOP domains d2iq7g_ G: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2iq7G00 G:24-362 Single-stranded right-handed beta-helix, Pectin lyase-like                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhh.eeeee..ee.....eee.......eeeee.eeee.........eeeeee..eeee....eee.hhhhh...hhhhh.......eeeeeeeeeeee..eee......eeee..eeeeee..eee.hhhh.........eeee..eeeeee..eee.....eee..eeeeeee..eee....eeeeee......eeeeeeeeeeeee...eeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeee..ee.........eeeeeeeeeeeee....eeeeee.....eeeeeeeeeeee................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iq7 G  24 ASCTFTDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEWEGPLISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKSTKCSNIPSGSGAAC 362
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Single-stranded right-handed beta-helix (140)

Superfamily: Pectin lyase-like (89)

Family: Galacturonase (11)

Protein domain: automated matches (1)

Colletotrichum lupini [TaxId: 145971] (1)

1a	d2iq7a_	A:
1b	d2iq7b_	B:
1c	d2iq7c_	C:
1d	d2iq7d_	D:
1e	d2iq7e_	E:
1f	d2iq7f_	F:
1g	d2iq7g_	G:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: 3 Solenoid (196)

Topology: Pectate Lyase C-like (105)

Homologous Superfamily: Single-stranded right-handed beta-helix, Pectin lyase-like (73)

Colletotrichum lupini. Organism_taxid: 145971 (1)

1a	2iq7A00	A:24-362
1b	2iq7B00	B:24-362
1c	2iq7C00	C:24-362
1d	2iq7D00	D:24-362
1e	2iq7E00	E:24-362
1f	2iq7G00	G:24-362
1g	2iq7F00	F:25-362

(no "Pfam Domain" information available for 2IQ7)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G (A1E266_9PEZI | A1E266)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004650	polygalacturonase activity	Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0071555	cell wall organization	A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Cis Peptide Bonds
		Gly A:226 - Ser A:227	[ RasMol ]
		Gly A:83 - Pro A:84	[ RasMol ]
		Gly B:226 - Ser B:227	[ RasMol ]
		Gly B:83 - Pro B:84	[ RasMol ]
		Gly C:226 - Ser C:227	[ RasMol ]
		Gly C:83 - Pro C:84	[ RasMol ]
		Gly D:226 - Ser D:227	[ RasMol ]
		Gly D:83 - Pro D:84	[ RasMol ]
		Gly E:226 - Ser E:227	[ RasMol ]
		Gly E:83 - Pro E:84	[ RasMol ]
		Gly F:226 - Ser F:227	[ RasMol ]
		Gly F:83 - Pro F:84	[ RasMol ]
		Gly G:226 - Ser G:227	[ RasMol ]
		Gly G:83 - Pro G:84	[ RasMol ]

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	2iq7
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(no "Entries Sharing at Least One Protein Chain" available for 2IQ7)

(no "Related Entries Specified in the PDB File" available for 2IQ7)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 28)

Sites (28, 28)

SS Bonds (28, 28)

Cis Peptide Bonds (14, 14)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (1, 7)

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