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(-) Description

Title :  CRYSTAL STRUCTURE OF INSULIN FRUCTOTRANSFERASE IN THE PRESENCE OF DI-FRUCTOSE
 
Authors :  S. Rhee, W. S. Jung
Date :  09 Oct 06  (Deposition) - 26 Dec 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Right-Handed Parallel Beta-Helix, Protein-Carbohydrate Complex, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. S. Jung, C. K. Hong, S. Lee, C. S. Kim, S. J. Kim, S. I. Kim, S. Rhee
Structural And Functional Insights Into Intramolecular Fructosyl Transfer By Insulin Fructotransferase
J. Biol. Chem. V. 282 8414 2007
PubMed-ID: 17192265  |  Reference-DOI: 10.1074/JBC.M607143200

(-) Compounds

Molecule 1 - INSULIN FRUCTOTRANSFERASE
    Chains: A, B, C
    EC Number: 4.2.2.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: B834(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS SP. SNU-7
    Organism Taxid: 159251

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric/Biological Unit (3, 20)
No.NameCountTypeFull Name
12PO2Ligand/IonPHOSPHONATE
2FRU6Ligand/IonFRUCTOSE
3MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREFRU A:2 , SER A:133 , GLU A:244 , PRO A:291 , ARG A:292 , PHE A:315 , HOH A:1034 , HOH A:1068 , HOH A:1147 , HOH A:1161BINDING SITE FOR RESIDUE FRU A 1
2AC2SOFTWAREFRU A:1 , HOH A:1081 , HOH A:1089 , HOH A:1135 , HOH A:1147 , ASP C:233BINDING SITE FOR RESIDUE FRU A 2
3AC3SOFTWAREASP A:182 , ARG B:181 , ASP B:182 , ASP C:182BINDING SITE FOR RESIDUE 2PO A 1002
4AC4SOFTWAREFRU B:2 , SER B:133 , GLU B:244 , PRO B:291 , ARG B:292 , PHE B:315 , HOH B:1024 , HOH B:1147 , HOH B:1149BINDING SITE FOR RESIDUE FRU B 1
5AC5SOFTWAREASP A:233 , FRU B:1 , HOH B:1061 , HOH B:1072 , HOH B:1131 , HOH B:1149BINDING SITE FOR RESIDUE FRU B 2
6AC6SOFTWARETHR A:285 , THR B:285 , GLY B:286 , HOH B:1084 , HOH B:1089 , HOH B:1093 , THR C:285 , GLY C:286BINDING SITE FOR RESIDUE 2PO B 1001
7AC7SOFTWAREFRU C:2 , SER C:133 , GLU C:244 , PRO C:291 , ARG C:292 , PHE C:315 , HOH C:465 , HOH C:533 , HOH C:581 , HOH C:604BINDING SITE FOR RESIDUE FRU C 1
8AC8SOFTWAREASP B:233 , FRU C:1 , HOH C:529 , HOH C:552 , HOH C:563 , HOH C:581BINDING SITE FOR RESIDUE FRU C 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2INV)

(-) Cis Peptide Bonds  (11, 11)

Asymmetric/Biological Unit
No.Residues
1Asp A:172 -Pro A:173
2Thr A:191 -Pro A:192
3Pro A:291 -Arg A:292
4Ala A:384 -Pro A:385
5Asp B:172 -Pro B:173
6Thr B:191 -Pro B:192
7Pro B:291 -Arg B:292
8Ala B:384 -Pro B:385
9Thr C:191 -Pro C:192
10Pro C:291 -Arg C:292
11Ala C:384 -Pro C:385

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2INV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2INV)

(-) Exons   (0, 0)

(no "Exon" information available for 2INV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:399
 aligned with Q3SAG3_9BACI | Q3SAG3 from UniProtKB/TrEMBL  Length:450

    Alignment length:399
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
         Q3SAG3_9BACI    52 PNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHALIVRGADALRVNDNMIAECGNCVELTGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFYPGMLRLLNGCKENLITANHIRRTNEGYPPFIGRGNGLDDLYGVVHIAGDNNLISDNLFAYNVPPANIAPAGAQPTQILIAGGDANVVALNHVVSDVASQHVVLDASTTHSKVLDSGTASQITSYSSDTAIRPTP 450
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee............hhhhhhhhhhhhhhhhhhhhh........eeeee..eeeee...eee....eeeee......hhhhhhh.............eeeee.......eeeee.......ee..eee..eee...............eeeee...ee..eee..eee...eeeee..ee..eee..eee...eeeee...ee..eee..eee.....eeeeee.ee..eee..ee.....eeeeee.....eee..eeee.....eeeeeeee..eee..eeeee...hhhhh............eeeeee..eeeeeeeeee.hhhhh.......eeeeeee....eeeeeeeee....eeeee.......eee...hhh.eee.....eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2inv A  52 PNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGmGFVYLEHALIVRGADALRVNDNmIAECGNCVELTGAGQATIVSGNHmGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFYPGmLRLLNGCKENLITANHIRRTNEGYPPFIGRGNGLDDLYGVVHIAGDNNLISDNLFAYNVPPANIAPAGAQPTQILIAGGDANVVALNHVVSDVASQHVVLDASTTHSKVLDSGTASQITSYSSDTAIRPTP 450
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211      |221       231       241       251       261   |   271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
                                                                                                                                                                                                218-MSE                241-MSE                 265-MSE                                               319-MSE                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:399
 aligned with Q3SAG3_9BACI | Q3SAG3 from UniProtKB/TrEMBL  Length:450

    Alignment length:399
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
         Q3SAG3_9BACI    52 PNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHALIVRGADALRVNDNMIAECGNCVELTGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFYPGMLRLLNGCKENLITANHIRRTNEGYPPFIGRGNGLDDLYGVVHIAGDNNLISDNLFAYNVPPANIAPAGAQPTQILIAGGDANVVALNHVVSDVASQHVVLDASTTHSKVLDSGTASQITSYSSDTAIRPTP 450
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee............hhhhhhhhhhhhhhhhhhhhh........eeeee..eeeee...eee....eeeee......hhhhhhh.............eeeee.......eeeee.......ee..eee..eee...............eeeee...ee..eee..eee...eeeee..ee..eee..eee...eeeee...ee..eee..eee.....eeeeee.ee..eee..ee.....eeeeee.....eee..eeee.....eeee......eee..eeeee...hhhhh............eeee....eeeeeeeeee.hhhhh.......eeeeeee....eeeeeeeee....eeeee.......eee...hhh.eee.....eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2inv B  52 PNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGmGFVYLEHALIVRGADALRVNDNmIAECGNCVELTGAGQATIVSGNHmGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFYPGmLRLLNGCKENLITANHIRRTNEGYPPFIGRGNGLDDLYGVVHIAGDNNLISDNLFAYNVPPANIAPAGAQPTQILIAGGDANVVALNHVVSDVASQHVVLDASTTHSKVLDSGTASQITSYSSDTAIRPTP 450
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211      |221       231       241       251       261   |   271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
                                                                                                                                                                                                218-MSE                241-MSE                 265-MSE                                               319-MSE                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:399
 aligned with Q3SAG3_9BACI | Q3SAG3 from UniProtKB/TrEMBL  Length:450

    Alignment length:399
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
         Q3SAG3_9BACI    52 PNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHALIVRGADALRVNDNMIAECGNCVELTGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFYPGMLRLLNGCKENLITANHIRRTNEGYPPFIGRGNGLDDLYGVVHIAGDNNLISDNLFAYNVPPANIAPAGAQPTQILIAGGDANVVALNHVVSDVASQHVVLDASTTHSKVLDSGTASQITSYSSDTAIRPTP 450
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee............hhhhhhhhhhhhhhhhhhhhh........eeeee..eeeee...eee....eeeee......hhhhhhh.............eeeee.......eeeee.......ee..eee..eee...............eeeee...ee..eee..eee...eeeee..ee..eee..eee...eeeee...ee..eee..eee.....eeeeee.ee..eee..ee.....eeeeee.....eee..eeee.....eeeeeeee..eee..eeeee...hhhhh............eeeeee..eeeeeeeeee.hhhhh.......eeeeeee....eeeeeeeee....eeeee.......eee...hhh.eee.....eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2inv C  52 PNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGmGFVYLEHALIVRGADALRVNDNmIAECGNCVELTGAGQATIVSGNHmGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFYPGmLRLLNGCKENLITANHIRRTNEGYPPFIGRGNGLDDLYGVVHIAGDNNLISDNLFAYNVPPANIAPAGAQPTQILIAGGDANVVALNHVVSDVASQHVVLDASTTHSKVLDSGTASQITSYSSDTAIRPTP 450
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211      |221       231       241       251       261   |   271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
                                                                                                                                                                                                218-MSE                241-MSE                 265-MSE                                               319-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2INV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2INV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2INV)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (Q3SAG3_9BACI | Q3SAG3)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3SAG3_9BACI | Q3SAG3: 2inu

(-) Related Entries Specified in the PDB File

2inu THE SAME NATIVE PROTEIN