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(-) Description

Title :  THEORETICAL MODEL FOR HUMAN TELOMERASE RNA MONOMER FROM FRET MEASUREMENTS.
 
Authors :  G. Gavory, M. F. Symmons, Y. K. Ghosh, D. Klenerman, S. Balasubramanian
Date :  06 Oct 06  (Deposition) - 24 Oct 06  (Release) - 24 Oct 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C,D
Keywords :  Telomerase Rna, Monomer, Pseudoknot, Template, Hybridised Fret Probes, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Gavory, M. F. Symmons, Y. K. Ghosh, D. Klenerman, S. Balasubramanian
Structural Analysis Of The Catalytic Core Of Human Telomerase Rna Monomer By Fret And Molecular Modeling
Biochemistry 2006
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NUCLEOTIDES 1-208 OF HUMAN TELOMERASE RNA
    Chains: A
    Fragment: HUMAN TELOMERASE RNA
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
 
Molecule 2 - RNA OLIGOMER FOR FRET PROBE INSERTION
    Chains: B
    Engineered: YES
    Fragment: RNA OLIGONUCLEOTIDE 1
    Mutation: YES
    Other Details: RNA OLIGOMER CARRYING FRET FLUORESCENT PROBES PRODUCED BY SOLID STATE SYNTHESIS. (PNA BACKBONE AND FLUORESCENT
    Synthetic: YES
 
Molecule 3 - RNA OLIGOMER FOR FRET PROBE INSERTION
    Chains: C
    Engineered: YES
    Fragment: RNA OLIGONUCLEOTIDE 2
    Mutation: YES
    Other Details: RNA OLIGOMER CARRYING FRET FLUORESCENT PROBES PRODUCED BY SOLID STATE SYNTHESIS. (PNA BACKBONE AND FLUORESCENT
    Synthetic: YES
 
Molecule 4 - RNA OLIGOMER FOR FRET PROBE INSERTION
    Chains: D
    Engineered: YES
    Fragment: RNA OLIGONUCLEOTIDE 3
    Mutation: YES
    Synthetic: YES

 Structural Features

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Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

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Chain A from PDB  Type:RNA  Length:208
                                                                                                                                                                                                                                                
                 2ina A   1 GGGUUGCGGAGGGUGGGCCUGGGAGGGGUGGUGGCCAUUUUUUGUCUAACCCUAACUGAGAAGGGCGUAGGCGCCGUGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUGCCGCCUUCCACCGUUCAUUCUAGAGCAAACAAAAAAUGUCAGCUGCUGGCCCGUUCGCCCCUCCCGGG 208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200        


Chain B from PDB  Type:RNA  Length:13
                                             
                 2ina B   1 CCCUCCGCAACCC  13
                                    10   


Chain C from PDB  Type:RNA  Length:13
                                             
                 2ina C   1 GUUAGGGUUAGAC  13
                                    10   


Chain D from PDB  Type:RNA  Length:13
                                             
                 2ina D   1 AAUGAACGGUGGA  13
                                    10
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