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(-) Description

Title :  PISUM SATIVUM DEFENSIN 1(PSD1) MUTANT W38D
 
Authors :  P. C Sathler, E. Kurtenbach, C. R. Rodrigues, H. C. Castro
Date :  28 Sep 06  (Deposition) - 24 Oct 06  (Release) - 24 Oct 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Plant Defensin, Antifungal, Pisum Sativum, Mutant (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. S. Almeida, K. M. S. Cabral, E. Kurtenbach, F. C. L. Almeida, A. P. Valente
Lution Structure Of Pisum Sativum Defensin 1 By High Resolution Nmr: Plant Defensins, Identical Backbone With Different Mechanisms Of Action.
J. Mol. Biol. V. 315 749 2002
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PISUM SATIVUM DEFENSIN 1 (PSD1) MUTANT W38D
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPIC9PSD1
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: PISUM SATIVUM

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (4, 4)

Theoretical Model
No.Residues
1A:3 -A:46
2A:14 -A:35
3A:20 -A:40
4A:24 -A:42

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (1, 1)

Theoretical Model (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAMMA_THIONINPS00940 Gamma-thionins family signature.DEF1_PEA1-24  1A:1-24

(-) Exons   (0, 0)

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:46
 aligned with DEF1_PEA | P81929 from UniProtKB/Swiss-Prot  Length:46

    Alignment length:46
                                    10        20        30        40      
              DEF1_PEA    1 KTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCHNWKCFCTQNC 46
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.........hhhhhhhhhhhhh....eeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE GAMMA_THIONIN           ---------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                  2iiw A  1 KTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCHNDKCFCTQNC 46
                                    10        20        30        40
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 Classification and Annotation

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (3, 3)

Theoretical Model(hide GO term definitions)
Chain A   (DEF1_PEA | P81929)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0031640    killing of cells of other organism    Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DEF1_PEA | P81929: 1jkz 2ij1 2ijt 2iju 2ijv 2ijw 2ikl 2ikm 2ikn 2ikp 2ikr 2ikt 2ikv 2ikw 2ikx 2iky 2ikz 2il0 2ilc 2ild 2ile 2ilf 2ilg 2ilh 2ilj

(-) Related Entries Specified in the PDB File

1jkz STRUCTURE VISUALIZATION WITH JMOL VIEWER NMR SOLUTION STRUCTURE OF PISUM SATIVUM DEFENSIN 1 (PSD1)