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(-) Description

Title :  CRYSTAL STRUCTURE OF A CUBIC CORE OF THE DIHYDROLIPOAMIDE ACYLTRANSFERASE (E2B) COMPONENT IN THE BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE COMPLEX (BCKDC), OXIDIZED COENZYME A-BOUND FORM
 
Authors :  M. Kato, R. M. Wynn, J. L. Chuang, C. A. Brautigam, M. Custorio, D. T. Chua
Date :  27 Sep 06  (Deposition) - 26 Dec 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.17
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D,E,F,G,H  (3x)
Keywords :  Cubic Core, Homo Trimer, Oxidized Coa-Bound Form, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kato, R. M. Wynn, J. L. Chuang, C. A. Brautigam, M. Custorio, D. T. Chuang
A Synchronized Substrate-Gating Mechanism Revealed By Cubic-Core Structure Of The Bovine Branched-Chain Alpha-Ketoacid Dehydrogenase Complex.
Embo J. V. 25 5983 2006
PubMed-ID: 17124494  |  Reference-DOI: 10.1038/SJ.EMBOJ.7601444

(-) Compounds

Molecule 1 - LIPOAMIDE ACYLTRANSFERASE COMPONENT OF BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE COMPLEX
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.3.1.168
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CORE (CATALYTIC) DOMAIN
    Gene: DBT
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: DIHYDROLIPOYLLYSINE-RESIDUE (2-METHYLPROPANOYL)TRANSFERASE, E2, DIHYDROLIPOAMIDE BRANCHED CHAIN TRANSACYLASE, BCKAD E2 SUBUNIT

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (3x): ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 40)

Asymmetric Unit (3, 40)
No.NameCountTypeFull Name
1ACT20Ligand/IonACETATE ION
2CAO8Ligand/IonOXIDIZED COENZYME A
3CL12Ligand/IonCHLORIDE ION
Biological Unit 1 (2, 84)
No.NameCountTypeFull Name
1ACT60Ligand/IonACETATE ION
2CAO24Ligand/IonOXIDIZED COENZYME A
3CL-1Ligand/IonCHLORIDE ION

(-) Sites  (37, 37)

Asymmetric Unit (37, 37)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:350 , VAL A:351 , LEU A:353 , ILE A:359 , CAO A:500 , HOH A:895BINDING SITE FOR RESIDUE ACT A 600
02AC2SOFTWAREMET B:206 , PRO B:350 , VAL B:351 , LEU B:353 , ILE B:359 , ACT B:601 , HOH B:910BINDING SITE FOR RESIDUE ACT B 600
03AC3SOFTWAREASP B:288 , LEU B:293 , ACT B:600 , HOH B:896 , HIS C:391 , ASP C:395 , GLY C:396BINDING SITE FOR RESIDUE ACT B 601
04AC4SOFTWARELEU B:353 , PRO B:354 , GLU B:356 , HOH B:862BINDING SITE FOR RESIDUE ACT B 602
05AC5SOFTWAREMET C:206 , ALA C:286 , VAL C:351 , LEU C:353 , ILE C:359 , ACT C:601BINDING SITE FOR RESIDUE ACT C 600
06AC6SOFTWAREHIS A:391 , ASP A:395 , GLY A:396 , ASP C:288 , LEU C:293 , ACT C:600BINDING SITE FOR RESIDUE ACT C 601
07AC7SOFTWAREPRO D:350 , VAL D:351 , LEU D:353 , ILE D:359 , ACT D:601 , HOH D:905BINDING SITE FOR RESIDUE ACT D 600
08AC8SOFTWAREASP D:288 , LEU D:293 , ACT D:600 , HIS E:391 , ASP E:395 , GLY E:396 , ACT H:602BINDING SITE FOR RESIDUE ACT D 601
09AC9SOFTWAREALA H:286 , ASP H:288 , SER H:338 , ASN H:339 , CAO H:500 , ACT H:601BINDING SITE FOR RESIDUE ACT D 602
10BC1SOFTWAREVAL E:351 , LEU E:353 , ILE E:359 , CAO E:500 , HOH E:897 , HIS F:391BINDING SITE FOR RESIDUE ACT E 600
11BC2SOFTWAREPRO F:350 , VAL F:351 , LEU F:353 , ILE F:359 , ACT F:601 , HOH F:908BINDING SITE FOR RESIDUE ACT F 600
12BC3SOFTWAREHIS D:391 , ASP D:395 , GLY D:396 , ASP F:288 , LEU F:293 , ACT F:600BINDING SITE FOR RESIDUE ACT F 601
13BC4SOFTWAREMET G:206 , ALA G:286 , VAL G:351 , LEU G:353 , ILE G:359 , CAO G:500 , HOH G:867BINDING SITE FOR RESIDUE ACT G 600
14BC5SOFTWAREPRO H:350 , VAL H:351 , LEU H:353 , ILE H:359 , ACT H:601 , HOH H:900BINDING SITE FOR RESIDUE ACT H 600
15BC6SOFTWAREACT D:602 , ASP H:288 , LEU H:293 , HIS H:391 , ASP H:395 , GLY H:396 , ACT H:600BINDING SITE FOR RESIDUE ACT H 601
16BC7SOFTWAREALA D:286 , SER D:338 , ASN D:339 , CAO D:500 , ACT D:601 , HOH D:830 , HOH H:907BINDING SITE FOR RESIDUE ACT H 602
17BC8SOFTWARELYS B:349 , HOH C:847BINDING SITE FOR RESIDUE CL B 801
18BC9SOFTWARELYS A:349 , HOH B:853BINDING SITE FOR RESIDUE CL A 802
19CC1SOFTWAREHOH A:822 , LYS C:349BINDING SITE FOR RESIDUE CL C 803
20CC2SOFTWAREHOH D:849 , LYS F:349BINDING SITE FOR RESIDUE CL F 804
21CC3SOFTWARELYS D:349 , HOH E:837BINDING SITE FOR RESIDUE CL D 805
22CC4SOFTWARELYS E:349 , HOH F:864BINDING SITE FOR RESIDUE CL E 806
23CC5SOFTWAREARG A:370 , ARG B:370 , HOH B:912 , ARG C:370BINDING SITE FOR RESIDUE CL C 807
24CC6SOFTWAREARG D:370 , ARG E:370 , HOH E:906 , ARG F:370BINDING SITE FOR RESIDUE CL F 808
25CC7SOFTWARELYS H:349 , HOH H:863BINDING SITE FOR RESIDUE CL H 809
26CC8SOFTWAREARG G:370BINDING SITE FOR RESIDUE CL G 810
27CC9SOFTWARELYS G:349 , HOH G:834BINDING SITE FOR RESIDUE CL G 811
28DC1SOFTWAREARG H:370BINDING SITE FOR RESIDUE CL H 812
29DC2SOFTWAREGLU F:225BINDING SITE FOR RESIDUE ACT F 813
30DC3SOFTWAREARG A:230 , SER A:245 , PHE A:246 , MET A:247 , ILE A:285 , ALA A:286 , MET A:287 , ASP A:288 , LEU A:293 , GLN A:317 , SER A:338 , ASN A:339 , GLY A:341 , SER A:342 , GLY A:363 , THR A:364 , ILE A:365 , ACT A:600 , HOH A:817 , HOH A:828 , HOH A:847 , HOH A:890 , HOH A:895 , HIS B:391 , ASP B:395 , GLY B:396BINDING SITE FOR RESIDUE CAO A 500
31DC4SOFTWAREARG B:230 , LYS B:234 , SER B:245 , PHE B:246 , MET B:247 , ILE B:285 , GLN B:317 , ASN B:339 , GLY B:341 , SER B:342 , GLY B:363 , THR B:364 , ILE B:365 , HOH B:848 , HOH B:870 , HOH B:875 , HOH B:917BINDING SITE FOR RESIDUE CAO B 500
32DC5SOFTWAREARG C:230 , SER C:245 , PHE C:246 , MET C:247 , ILE C:285 , GLN C:317 , ASN C:339 , GLY C:341 , SER C:342 , GLY C:363 , THR C:364 , ILE C:365 , HOH C:839 , HOH C:846 , HOH C:864BINDING SITE FOR RESIDUE CAO C 500
33DC6SOFTWAREARG D:230 , SER D:245 , PHE D:246 , ILE D:285 , ASN D:339 , GLY D:341 , SER D:342 , GLY D:363 , THR D:364 , ILE D:365 , HOH D:830 , HOH D:857 , HOH D:869 , HOH D:894 , ACT H:602 , HOH H:907BINDING SITE FOR RESIDUE CAO D 500
34DC7SOFTWAREARG E:230 , LYS E:234 , SER E:245 , PHE E:246 , MET E:247 , ILE E:285 , ALA E:286 , MET E:287 , ASP E:288 , LEU E:293 , GLN E:317 , SER E:338 , ASN E:339 , GLY E:341 , SER E:342 , GLY E:363 , THR E:364 , ILE E:365 , ACT E:600 , HOH E:825 , HOH E:846 , HOH E:864 , HOH E:903 , HIS F:391 , ASP F:395 , GLY F:396 , HOH F:829BINDING SITE FOR RESIDUE CAO E 500
35DC8SOFTWAREARG F:230 , LYS F:234 , SER F:245 , PHE F:246 , MET F:247 , ILE F:285 , ASN F:339 , GLY F:341 , SER F:342 , GLY F:363 , THR F:364 , ILE F:365 , HOH F:840 , HOH F:859BINDING SITE FOR RESIDUE CAO F 500
36DC9SOFTWAREARG G:230 , LYS G:234 , SER G:245 , PHE G:246 , MET G:247 , ALA G:286 , ASP G:288 , LEU G:293 , LEU G:313 , GLN G:317 , SER G:338 , ASN G:339 , GLY G:341 , SER G:342 , GLY G:363 , THR G:364 , ILE G:365 , HIS G:391 , GLY G:396 , ACT G:600 , HOH G:831 , HOH G:861 , HOH G:867BINDING SITE FOR RESIDUE CAO G 500
37EC1SOFTWAREACT D:602 , ARG H:230 , LYS H:243 , SER H:245 , PHE H:246 , MET H:247 , ILE H:285 , MET H:287 , GLN H:317 , ASN H:339 , GLY H:341 , SER H:342 , GLY H:363 , THR H:364 , ILE H:365 , HOH H:839 , HOH H:883 , HOH H:885 , HOH H:901BINDING SITE FOR RESIDUE CAO H 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2II3)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Pro A:354 -Pro A:355
2Pro B:354 -Pro B:355
3Pro C:354 -Pro C:355
4Pro D:354 -Pro D:355
5Pro E:354 -Pro E:355
6Pro F:354 -Pro F:355
7Pro G:354 -Pro G:355
8Pro H:354 -Pro H:355

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2II3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2II3)

(-) Exons   (6, 48)

Asymmetric Unit (6, 48)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000082921ENSBTAE00000066923chr3:46005062-4600501152ODB2_BOVIN1-17170--
1.2ENSBTAT000000082922ENSBTAE00000066924chr3:45998129-45998006124ODB2_BOVIN18-59420--
1.3ENSBTAT000000082923ENSBTAE00000066927chr3:45994079-4599400476ODB2_BOVIN59-84260--
1.4ENSBTAT000000082924ENSBTAE00000066928chr3:45992742-45992561182ODB2_BOVIN84-145620--
1.5ENSBTAT000000082925ENSBTAE00000066929chr3:45984019-45983898122ODB2_BOVIN145-185410--
1.6ENSBTAT000000082926ENSBTAE00000271415chr3:45981101-45980885217ODB2_BOVIN186-258738A:188-197
B:188-197
C:188-197
D:188-197
E:188-197
F:188-197
G:188-197
H:188-197		10
10
10
10
10
10
10
10
1.7ENSBTAT000000082927ENSBTAE00000066931chr3:45975055-45974889167ODB2_BOVIN258-313568A:197-252
B:197-252
C:197-252
D:197-252
E:197-252
F:197-252
G:197-252
H:197-252		56
56
56
56
56
56
56
56
1.8ENSBTAT000000082928ENSBTAE00000066932chr3:45970598-4597052178ODB2_BOVIN314-339268A:253-278
B:253-278
C:253-278
D:253-278
E:253-278
F:253-278
G:253-278
H:253-278		26
26
26
26
26
26
26
26
1.9ENSBTAT000000082929ENSBTAE00000066933chr3:45969014-45968823192ODB2_BOVIN340-403648A:279-342
B:279-342
C:279-342
D:279-342
E:279-342
F:279-342
G:279-342
H:279-342		64
64
64
64
64
64
64
64
1.10ENSBTAT0000000829210ENSBTAE00000066934chr3:45968682-4596861172ODB2_BOVIN404-427248A:343-366
B:343-366
C:343-366
D:343-366
E:343-366
F:343-366
G:343-366
H:343-366		24
24
24
24
24
24
24
24
1.11ENSBTAT0000000829211ENSBTAE00000066935chr3:45964419-459628291591ODB2_BOVIN428-482558A:367-421
B:367-421
C:367-421
D:367-421
E:367-421
F:367-421
G:367-421
H:367-421		55
55
55
55
55
55
55
55

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
 aligned with ODB2_BOVIN | P11181 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:234
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478    
           ODB2_BOVIN   249 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 482
               SCOP domains d2ii3a_ A: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhh.eeeeeeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eee.....eeee.....eee.eee..eee..ee.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...eeeehhhhh....ee........eeeee...eeeeee.....eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.6  -------------------------------------------------------Exon 1.8  PDB: A:253-278  Exon 1.9  PDB: A:279-342 UniProt: 340-403                       Exon 1.10  PDB: A:343-36Exon 1.11  PDB: A:367-421 UniProt: 428-482              Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.7  PDB: A:197-252 UniProt: 258-313               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2ii3 A 188 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 421
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417    


Chain B from PDB  Type:PROTEIN  Length:234
 aligned with ODB2_BOVIN | P11181 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:234
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478    
           ODB2_BOVIN   249 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 482
               SCOP domains d2ii3b_ B: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee...hhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eee.....eeee.....eee.eee..eee..ee.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...eeeee.hhh....ee........eeeee...eeeeee.....eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.6  -------------------------------------------------------Exon 1.8  PDB: B:253-278  Exon 1.9  PDB: B:279-342 UniProt: 340-403                       Exon 1.10  PDB: B:343-36Exon 1.11  PDB: B:367-421 UniProt: 428-482              Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.7  PDB: B:197-252 UniProt: 258-313               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2ii3 B 188 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 421
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417    


Chain C from PDB  Type:PROTEIN  Length:234
 aligned with ODB2_BOVIN | P11181 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:234
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478    
           ODB2_BOVIN   249 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 482
               SCOP domains d2ii3c_ C: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee...hhhhhhhhhhhhhhh.eeeeeeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eee.....eeee.....eee.ee....ee..ee.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...eeeehhhhh....ee........eeeee...eeeeee.....eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.6  -------------------------------------------------------Exon 1.8  PDB: C:253-278  Exon 1.9  PDB: C:279-342 UniProt: 340-403                       Exon 1.10  PDB: C:343-36Exon 1.11  PDB: C:367-421 UniProt: 428-482              Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.7  PDB: C:197-252 UniProt: 258-313               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2ii3 C 188 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 421
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417    


Chain D from PDB  Type:PROTEIN  Length:234
 aligned with ODB2_BOVIN | P11181 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:234
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478    
           ODB2_BOVIN   249 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 482
               SCOP domains d2ii3d_ D: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eee.....eeee.....eee.eee..eee..ee.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...eeeehhhhh....ee........eeeee...eeeeee.....eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.6  -------------------------------------------------------Exon 1.8  PDB: D:253-278  Exon 1.9  PDB: D:279-342 UniProt: 340-403                       Exon 1.10  PDB: D:343-36Exon 1.11  PDB: D:367-421 UniProt: 428-482              Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.7  PDB: D:197-252 UniProt: 258-313               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2ii3 D 188 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 421
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417    


Chain E from PDB  Type:PROTEIN  Length:234
 aligned with ODB2_BOVIN | P11181 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:234
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478    
           ODB2_BOVIN   249 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 482
               SCOP domains d2ii3e_ E: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee...hhhhhhhhhhhhhhh.eeeeeeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eee.....eeee.....eee...........ee.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...eeeehhhhh....ee........eeeee...eeeeee.....eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.6  -------------------------------------------------------Exon 1.8  PDB: E:253-278  Exon 1.9  PDB: E:279-342 UniProt: 340-403                       Exon 1.10  PDB: E:343-36Exon 1.11  PDB: E:367-421 UniProt: 428-482              Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.7  PDB: E:197-252 UniProt: 258-313               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2ii3 E 188 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 421
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417    


Chain F from PDB  Type:PROTEIN  Length:234
 aligned with ODB2_BOVIN | P11181 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:234
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478    
           ODB2_BOVIN   249 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 482
               SCOP domains d2ii3f_ F: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eee.....eeee.....eeeeeee..eee..ee.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...eeee.hhhh....ee........eeeee...eeeeee.....eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.6  -------------------------------------------------------Exon 1.8  PDB: F:253-278  Exon 1.9  PDB: F:279-342 UniProt: 340-403                       Exon 1.10  PDB: F:343-36Exon 1.11  PDB: F:367-421 UniProt: 428-482              Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.7  PDB: F:197-252 UniProt: 258-313               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2ii3 F 188 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 421
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417    


Chain G from PDB  Type:PROTEIN  Length:234
 aligned with ODB2_BOVIN | P11181 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:234
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478    
           ODB2_BOVIN   249 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 482
               SCOP domains d2ii3g_ G: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.eee......eee.....eee.ee....ee..ee.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...eeeehhhhh..............eeeee...eeeeee.....eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.6  -------------------------------------------------------Exon 1.8  PDB: G:253-278  Exon 1.9  PDB: G:279-342 UniProt: 340-403                       Exon 1.10  PDB: G:343-36Exon 1.11  PDB: G:367-421 UniProt: 428-482              Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.7  PDB: G:197-252 UniProt: 258-313               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2ii3 G 188 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 421
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417    


Chain H from PDB  Type:PROTEIN  Length:234
 aligned with ODB2_BOVIN | P11181 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:234
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478    
           ODB2_BOVIN   249 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 482
               SCOP domains d2ii3h_ H: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhh.eeeeeeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eee......eee.....eee.eee..eee..ee.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...eeeehhhhh..............eeeee...eeeeee.....eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.6  -------------------------------------------------------Exon 1.8  PDB: H:253-278  Exon 1.9  PDB: H:279-342 UniProt: 340-403                       Exon 1.10  PDB: H:343-36Exon 1.11  PDB: H:367-421 UniProt: 428-482              Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.7  PDB: H:197-252 UniProt: 258-313               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2ii3 H 188 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 421
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2II3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2II3)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (ODB2_BOVIN | P11181)
molecular function
    GO:0043754    dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity    Catalysis of the reaction: 2-methylpropanoyl-CoA + enzyme N6-(dihydrolipoyl)lysine = CoA + enzyme N6-(S-[2-methylpropanoyl]dihydrolipoyl)lysine.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0042645    mitochondrial nucleoid    The region of a mitochondrion to which the DNA is confined.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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  2ii3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ODB2_BOVIN | P11181: 2ihw 2ii4 2ii5

(-) Related Entries Specified in the PDB File

2ihw CRYSTAL STRUCTURE OF CUBIC CORE OF THE DIHYDROLIPOAMIDE ACYLTRANSFERASE (E2B) COMPONENT IN THE BRANCHED-CHAIN ALPHA -KETOACID DEHYDROGENASE COMPLEX (BCKDC), APO FORM
2ii4 CRYSTAL STRUCTURE OF CUBIC CORE OF THE DIHYDROLIPOAMIDE ACYLTRANSFERASE (E2B) COMPONENT IN THE BRANCHED-CHAIN ALPHA -KETOACID DEHYDROGENASE COMPLEX (BCKDC), COENZYME A-BOUND FORM
2ii5 CRYSTAL STRUCTURE OF CUBIC CORE OF THE DIHYDROLIPOAMIDE ACYLTRANSFERASE (E2B) COMPONENT IN THE BRANCHED-CHAIN ALPHA -KETOACID DEHYDROGENASE COMPLEX (BCKDC), ISOBUTYRYL- COENZYME A-BOUND FORM