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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE 4-METHYLMUCONOLACTONE METHYLISOMERASE (YP_295714.1) FROM RALSTONIA EUTROPHA JMP134 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  21 Sep 06  (Deposition) - 10 Oct 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Yp_295714. 1, Hypothetical Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Joint Center For Structural Genomics, Jcsg, Structural Genomics-Unknown Function Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Yp_295714. 1) Fro Ralstonia Eutropha Jmp134 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_295714.1
    Organism Scientific: CUPRIAVIDUS NECATOR
    Organism Taxid: 106590

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:81 , ASP A:82BINDING SITE FOR RESIDUE CL A 114
2AC2SOFTWAREPRO A:105 , VAL A:106 , ALA A:107 , TYR B:27 , GLU B:40 , VAL B:41 , HOH B:174BINDING SITE FOR RESIDUE GOL B 114
3AC3SOFTWARETYR A:27 , GLU A:40 , VAL A:41 , HOH A:151 , PRO B:105 , VAL B:106 , ALA B:107BINDING SITE FOR RESIDUE GOL A 115

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IFX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2IFX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IFX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2IFX)

(-) Exons   (0, 0)

(no "Exon" information available for 2IFX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
 aligned with Q471R3_CUPNJ | Q471R3 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                             1                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99         
         Q471R3_CUPNJ     - -MIRLLYLLVKPAGMSDETFRAECLRHYEMSHDVPGLHKYEVRLVAEQPTDTHVPFFDIGHVDAIGECWFKDDAAYATYMASDIRKAWFEHGKTFIGQLKPFRTAPVAG 108
               SCOP domains -d2ifxa1 A:1-108 Hypothetical protein Reut_A1503                                                              SCOP domains
               CATH domains 2ifxA01 A:0-44,A:62-104                      -----------------2ifxA01 A:0-44,A:62-104                    ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhhhhh......eeeeeeeee..---...........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2ifx A   0 GmIRLLYLLVKPAGmSDETFRAECLRHYEmSHDVPGLHKYEVRLVAEQP---HVPFFDIGHVDAIGECWFKDDAAYATYmASDIRKAWFEHGKTFIGQLKPFRTAPVAG 108
                             |       9    |   19        29        39        |-  |     59        69        79        89        99         
                             |           14-MSE         29-MSE             48  52                         79-MSE                         
                             1-MSE                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:97
 aligned with Q471R3_CUPNJ | Q471R3 from UniProtKB/TrEMBL  Length:113

    Alignment length:108
                             1                                                                                                          
                             |       9        19        29        39        49        59        69        79        89        99        
         Q471R3_CUPNJ     - -MIRLLYLLVKPAGMSDETFRAECLRHYEMSHDVPGLHKYEVRLVAEQPTDTHVPFFDIGHVDAIGECWFKDDAAYATYMASDIRKAWFEHGKTFIGQLKPFRTAPVA 107
               SCOP domains d2ifxb_ B: Hypothetical protein Reut_A1503                                                                   SCOP domains
               CATH domains 2ifxB01 B:0-44,B:62-104                      -----------------2ifxB01 B:0-44,B:62-104                    --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee.....hhhhhhhhhhhhhhhhh......eeeeeeeee..-----------...eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2ifx B   0 GmIRLLYLLVKPAGmSDETFRAECLRHYEmSHDVPGLHKYEVRLVAEQP-----------HVDAIGECWFKDDAAYATYmASDIRKAWFEHGKTFIGQLKPFRTAPVA 107
                             |       9    |   19        29        39        |-         -|       69        79        89        99        
                             1-MSE       14-MSE         29-MSE             48          60                 79-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IFX)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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