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(-) Description

Title :  HOMOLOGY MODELLING OF PRS25 FROM PLASMODIUM REICHENOWI.
 
Authors :  B. Sharma
Date :  18 Sep 06  (Deposition) - 03 Oct 06  (Release) - 03 Oct 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  _
Keywords :  Homology Modeling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  

PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN
    Chains: _
    Fragment: MATURE PROTEIN WITHOUT SIGNAL SEQUENCE AND GPI ANCHOR
    Organism Scientific: PLASMODIUM REICHENOWI
    Other Details: OOKINETE SURFACE PROTEIN

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2IE5)

(-) Sites  (0, 0)

(no "Site" information available for 2IE5)

(-) SS Bonds  (11, 11)

Theoretical Model
No.Residues
1 :8 - :22
2 :24 - :36
3 :43 - :58
4 :52 - :70
5 :72 - :83
6 :88 - :98
7 :93 - :111
8 :113 - :127
9 :135 - :146
10 :139 - :155
11 :157 - :170

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 2)

Theoretical Model (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EGF_2PS01186 EGF-like domain signature 2.OS25_PLARE92-105
177-192		  2_:70-83
_:155-170

(-) Exons   (0, 0)

(no "Exon" information available for 2IE5)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain _ from PDB  Type:PROTEIN  Length:176
 aligned with OS25_PLARE | P19455 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:176
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192      
           OS25_PLARE    23 KVTVDTVCKKGFLIQMSGHLECKCENDLVLVNEETCEEKVLKCDETTVNKPCGDFSKCIKIDGSPISYACKCNPGYDMVNNVCILNECKNVTCGNGKCILDTSNPVKTGVCSCNIGKVPNADDKNKCSKDGETKCSLKCLKENETCKAVDGIYKCDCKDGFIMDNESSTCTAFSVY 198
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee....eeeee....ee.....ee.............eee..eeee.........eeee...eee....eee.hhh......eeeeee......eeeeee...eeee.....eeeee.............eeeeee..eeeeee....eee....eee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------EGF_2  PDB: - -----------------------------------------------------------------------EGF_2  PDB: -   ------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ie5 _   1 KVTVDTVCKKGFLIQMSGHLECKCENDLVLVNEETCEEKVLKCDETTVNKPCGDFSKCIKIDGSPISYACKCNPGYDMVNNVCILNECKNVTCGNGKCILDTSNPVKTGVCSCNIGKVPNADDKNKCSKDGETKCSLKCLKENETCKAVDGIYKCDCKDGFIMDNESSTCTAFSVY 176
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2IE5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2IE5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IE5)

(-) Gene Ontology  (4, 4)

Theoretical Model(hide GO term definitions)
Chain   (OS25_PLARE | P19455)
cellular component
    GO:0031225    anchored component of membrane    The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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(-) Related Entries Specified in the PDB File

1z27 THIS MOLECULE WAS USED AS A TEMPLATE FOR HOMOLOGY MODELLING OF THE PROTEIN.