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(-) Description

Title :  CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN AF0160 FROM ARCHAEOGLOBUS FULGIDUS
 
Authors :  M. Zhao, M. Zhang, J. Chang, L. Chen, H. Xu, Y. Li, Z. J. Liu, J. P. Rose, B. C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  15 Sep 06  (Deposition) - 14 Nov 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  B,C  (1x)
Keywords :  Af0160, Archaeoglobus Fulgidus, Structural Genomics, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zhao, M. Zhang, J. Chang, L. Chen, H. Xu, Y. Li, Z. J. Liu, J. P. Rose, B. C. Wang
Crystal Structure Of Hypothetical Protein Af0160 From Archaeoglobus Fulgidus At 2. 69 Angstrom Resolution
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN AF0160
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AF_0160
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C
Biological Unit 4 (1x):  BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric Unit (1, 15)
No.NameCountTypeFull Name
1MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2IDG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IDG)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Ile A:3 -Gly A:4
2Tyr A:21 -Asp A:22
3Gln C:111 -Mse C:112

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IDG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2IDG)

(-) Exons   (0, 0)

(no "Exon" information available for 2IDG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
 aligned with TTRD_ARCFU | O30077 from UniProtKB/Swiss-Prot  Length:174

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
           TTRD_ARCFU     1 MTIGRAKVYATLSKIFYHLFYDEAIPKDCREIIEKFGEIDFNLRSVLVRELRGSVLIKDMPQSLAEVYESVMKDFYERYGFQASELHADHIAVELAFMSKLVEREISLAQQMKEEELYKIRAAQHRFIKAHLQPLVKNLPSAPLLNFVRDFVREDAKYLY 160
               SCOP domains d2idga1 A:1-160 Hypothetical protein AF0160                                                                                                                      SCOP domains
               CATH domains -2idgA00 A:2-160 TorD-like                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2idg A   1 mTIGRAKVYATLSKIFYHLFYDEAIPKDCREIIEKFGEIDFNLRSVLVRELRGSVLIKDmPQSLAEVYESVmKDFYERYGFQASELHADHIAVELAFmSKLVEREISLAQQmKEEELYKIRAAQHRFIKAHLQPLVKNLPSAPLLNFVRDFVREDAKYLY 160
                            |       10        20        30        40        50        60        70 |      80        90       100       110 |     120       130       140       150       160
                            |                                                         60-MSE      72-MSE                    98-MSE       112-MSE                                            
                            1-MSE                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:163
 aligned with TTRD_ARCFU | O30077 from UniProtKB/Swiss-Prot  Length:174

    Alignment length:163
                             1                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159   
           TTRD_ARCFU     - -MTIGRAKVYATLSKIFYHLFYDEAIPKDCREIIEKFGEIDFNLRSVLVRELRGSVLIKDMPQSLAEVYESVMKDFYERYGFQASELHADHIAVELAFMSKLVEREISLAQQMKEEELYKIRAAQHRFIKAHLQPLVKNLPSAPLLNFVRDFVREDAKYLYSS 162
               SCOP domains d2idgb_ B: Hypothetical protein AF0160                                                                                                                              SCOP domains
               CATH domains 2idgB00 B:0-162 TorD-like                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2idg B   0 SmTIGRAKVYATLSKIFYHLFYDEAIPKDCREIIEKFGEIDFNLRSVLVRELRGSVLIKDmPQSLAEVYESVmKDFYERYGFQASELHADHIAVELAFmSKLVEREISLAQQmKEEELYKIRAAQHRFIKAHLQPLVKNLPSAPLLNFVRDFVREDAKYLYSS 162
                             |       9        19        29        39        49        59|       69  |     79        89        99       109  |    119       129       139       149       159   
                             1-MSE                                                     60-MSE      72-MSE                    98-MSE       112-MSE                                              


Chain C from PDB  Type:PROTEIN  Length:164
 aligned with TTRD_ARCFU | O30077 from UniProtKB/Swiss-Prot  Length:174

    Alignment length:165
                             1                                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159     
           TTRD_ARCFU     - -MTIGRAKVYATLSKIFYHLFYDEAIPKDCREIIEKFGEIDFNLRSVLVRELRGSVLIKDMPQSLAEVYESVMKDFYERYGFQASELHADHIAVELAFMSKLVEREISLAQQMKEEELYKIRAAQHRFIKAHLQPLVKNLPSAPLLNFVRDFVREDAKYLYSSLV 164
               SCOP domains d2idgc_ C: Hypothetical protein AF0160                                                                                                                                SCOP domains
               CATH domains 2idgC00 C:0-164 TorD-like                                                                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh-..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2idg C   0 SmTIGRAKVYATLSKIFYHLFYDEAIPKDCREIIEKFGEIDFNLRSVLVRELRGSVLIKDmPQSLAEVYESVmKDFYERYGFQASELHADHIAVELAFmSKLVEREISLA-QmKEEELYKIRAAQHRFIKAHLQPLVKNLPSAPLLNFVRDFVREDAKYLYSSLV 164
                             |       9        19        29        39        49        59|       69  |     79        89        99       109 ||    119       129       139       149       159     
                             1-MSE                                                     60-MSE      72-MSE                    98-MSE    109 ||                                                    
                                                                                                                                         111|                                                    
                                                                                                                                          112-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IDG)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (TTRD_ARCFU | O30077)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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        TTRD_ARCFU | O30077: 2xol 2y6y 2yjm

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