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Title :  3D STRUCTURE(30-503AA) OF INTERLEUKIN 4 INDUCED 1 [MUS MUSCULUS](PUBMED ID NP_034345)
 
Authors :  P. Bhattacharya
Date :  04 Sep 06  (Deposition) - 26 Sep 06  (Release) - 26 Sep 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  _
Keywords :  Interleukin 4 Induced Protein 1 Of Mus Muculus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Bhattacharya, School Of Life Sciences, Jawaharlal Nehru University, New Delhi-110067, India, Tel:91-011-2670-4523, Fax:91-011-2618-7338
3D Structure(30-503Aa) Of Interleukin 4 Induced 1 [Mus Musculus](Pubmed Id Np_034345)
Journal(Not Yet Decided) V. 0 0 2006
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 3D STRUCTURE(30-503AA) OF INTERLEUKIN 4 INDUCED 1 [MUS MUSCULUS](PUBMED ID NP_034345)
    Chains: _
    EC Number: 1.4.3.2
    Fragment: 3D STRUCTURE(30-503AA) OF INTERLEUKIN 4 INDUCED 1 [MUS MUSCULUS](PUBMED ID NP_034345)
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Strain: 3D STRUCTURE(30-503AA) OF INTERLEUKIN 4 INDUCED 1 [MUS MUSCULUS](PUBMED ID NP_034345)

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2I8W)

(-) Sites  (0, 0)

(no "Site" information available for 2I8W)

(-) SS Bonds  (1, 1)

Theoretical Model
No.Residues
1 :35 - :198

(-) Cis Peptide Bonds  (2, 2)

Theoretical Model
No.Residues
1Ser  :330 -Pro  :331
2Val  :428 -Phe  :429

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2I8W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2I8W)

(-) Exons   (0, 0)

(no "Exon" information available for 2I8W)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain _ from PDB  Type:PROTEIN  Length:473
 aligned with OXLA_MOUSE | O09046 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:473
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   
           OXLA_MOUSE    30 NPIEKCMEDHDYEQLLKVVTLGLNRTSKPQKVVVVGAGVAGLVAAKMLSDAGHKVTILEADNRIGGRIFTFRDEKTGWIGELGAMRMPSSHRILHKLCRTLGLNLTQFTQYDENTWTEVHNVKLRNYVVEKMPEKLGYNLNNRERGHSPEDIYQMALNKAFKDLKALGCKKAMNKFNKHTLLEYLLEEGNLSRPAVQLLGDVMSEEGFFYLSFAEALRAHACLSDRLRYSRIVGGWDLLPRALLSSLSGALLLNAPVVSITQGRNDVRVHIATSLHSEKTLTADVVLLTASGPALQRITFSPPLTRKRQEALRALHYVAASKVFLSFRRPFWHEEHIEGGHSNTDRPSRLIFYPARGEGSLLLASYTWSDAAAPFAGLSTDQTLRLVLQDVAALHGPVVFRLWDGRGVVKRWAEDPHSQGGFVVQPPLYGREAEDYDWSAPFGRIYFAGEHTALPHGWVETAVKSGLRAAVRI 502
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeee...........eeee....eeee.....ee..hhhhhhhhhhh...eee........eeee..eeeehhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhh....eeee....hhhhhhhhhhh...ee....eeeeeee..eeeeeee.....eeeeee.eeee..hhhhhhh.eee...hhhhhhhhhhh.ee.eeeeeeee..hhhhhhh....eeee.....eee........eeeeeeeehhhhh.....hhhhhhhhhhhhhhhhh........eeeeeeee.hhh......ee.....hhhhhhhhhhhh....eee.hhhhh....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i8w _  30 NPIEKCMEDHDYEQLLKVVTLGLNRTSKPQKVVVVGAGVAGLVAAKMLSDAGHKVTILEADNRIGGRIFTFRDEKTGWIGELGAMRMPSSHRILHKLCRTLGLNLTQFTQYDENTWTEVHNVKLRNYVVEKMPEKLGYNLNNRERGHSPEDIYQMALNKAFKDLKALGCKKAMNKFNKHTLLEYLLEEGNLSRPAVQLLGDVMSEEGFFYLSFAEALRAHACLSDRLRYSRIVGGWDLLPRALLSSLSGALLLNAPVVSITQGRNDVRVHIATSLHSEKTLTADVVLLTASGPALQRITFSPPLTRKRQEALRALHYVAASKVFLSFRRPFWHEEHIEGGHSNTDRPSRLIFYPARGEGSLLLASYTWSDAAAPFAGLSTDQTLRLVLQDVAALHGPVVFRLWDGRGVVKRWAEDPHSQGGFVVQPPLYGREAEDYDWSAPFGRIYFAGEHTALPHGWVETAVKSGLRAAVRI 502
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2I8W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2I8W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2I8W)

(-) Gene Ontology  (5, 5)

Theoretical Model(hide GO term definitions)
Chain   (OXLA_MOUSE | O09046)
molecular function
    GO:0001716    L-amino-acid oxidase activity    Catalysis of the reaction: a L-amino acid + H2O + O2 = a 2-oxo acid + NH3 + hydrogen peroxide.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0009072    aromatic amino acid family metabolic process    The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.

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  Cis Peptide Bonds
    Ser  :330 - Pro  :331   [ RasMol ]  
    Val  :428 - Phe  :429   [ RasMol ]  
 

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