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(-) Description

Title :  GAAA TETRALOOOP RECEPTOR COMPLEX WITH ASSOCIATED COBALT HEXAMMINE.
 
Authors :  J. H. Davis, S. E. Butcher
Date :  30 Aug 06  (Deposition) - 03 Apr 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
Keywords :  Gaaa Tetraloop, 11-Nucleotide Receptor, Rna Tertiary Structure, Ribonucleic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Davis, T. R. Foster, M. Tonelli, S. E. Butcher
Role Of Metal Ions In The Tetraloop-Receptor Complex As Analyzed By Nmr.
Rna V. 13 76 2007
PubMed-ID: 17119098  |  Reference-DOI: 10.1261/RNA.268307
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 43-MER
    Chains: A, B
    Engineered: YES
    Other Details: GAAA TETRALOOP RECEPTOR RNA
    Other Details - Source: THE GAAA TETRALOOP AND 11-NT RECEPTOR IN THIS SEQUENCE ARE FOUND IN GROUP I AND GROUP II INTRONS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

NMR Structure (1, 4)
No.NameCountTypeFull Name
1NCO4Ligand/IonCOBALT HEXAMMINE(III)

(-) Sites  (4, 4)

NMR Structure (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:18 , G A:19 , G A:20 , C A:24 , U A:25BINDING SITE FOR RESIDUE NCO A 101
2AC2SOFTWAREU A:7 , G A:9 , A A:10 , U A:33 , C A:34BINDING SITE FOR RESIDUE NCO A 102
3AC3SOFTWAREG B:61 , G B:62 , G B:63 , U B:68BINDING SITE FOR RESIDUE NCO B 103
4AC4SOFTWAREA B:49 , G B:52 , A B:53 , U B:75 , U B:76 , C B:77BINDING SITE FOR RESIDUE NCO B 104

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2I7E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2I7E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2I7E)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:43
                                                                          
                  2i7e A  1 GGGAUAUGGAAGAACCGGGGAAACUUGGUUCUUCCUAAGUCCU 43
                                    10        20        30        40   


Chain B from PDB  Type:RNA  Length:43
                                                                          
                  2i7e B 44 GGGAUAUGGAAGAACCGGGGAAACUUGGUUCUUCCUAAGUCCU 86
                                    53        63        73        83
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2I7E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2I7E)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

2adt SAME RNA DETERMINED WITHOUT ASSOCIATED METAL IONS.