2I7A - JenaLib

Title :   DOMAIN IV OF HUMAN CALPAIN 13

Authors :   J. R. Walker, K. Ng, T. L Davis, R. Ravulapalli, C. Butler-Cole, P. J. Fi Jr. , E. M. Newman, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edw A. Bochkarev, S. Dhe-Paganon, Structural Genomics Consortium (S

Date :   30 Aug 06 (Deposition) - 12 Sep 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Calpain, Calcium-Dependent Cytoplasmic Cysteine Proteinases, Papain- Like, Ef-Hand, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Walker, K. Ng, T. L. Davis, R. Ravulapalli, C. Butler-Cole, P. J. Finerty Jr. , E. M. Newman, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
Structure Of Human Calpain 13
To Be Published
PubMed: search

Compounds

Molecule 1 - CALPAIN 13
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28-LIC
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 515-669
	Gene	:	CAPN13
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 10)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	SO4	8	Ligand/Ion	SULFATE ION

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:53 , GLU A:551 , LYS A:553 , ASN A:555 , ARG A:557 , GLU A:562	BINDING SITE FOR RESIDUE CA A 2
2	AC2	SOFTWARE	HOH A:9 , HOH A:19 , HOH A:47 , ASP A:536 , LEU A:540 , ARG A:544 , SER A:627 , SER A:630	BINDING SITE FOR RESIDUE SO4 A 3
3	AC3	SOFTWARE	ARG A:565 , ARG A:569	BINDING SITE FOR RESIDUE SO4 A 4
4	AC4	SOFTWARE	HOH A:58 , HOH A:81 , HIS A:575 , LYS A:579	BINDING SITE FOR RESIDUE SO4 A 5
5	AC5	SOFTWARE	HOH A:86 , ASN A:555 , ARG A:557	BINDING SITE FOR RESIDUE SO4 A 6
6	AC6	SOFTWARE	HOH A:80 , HOH A:83 , VAL A:571 , GLN A:574 , HIS A:575 , GLN A:578 , ILE A:607 , LEU A:612	BINDING SITE FOR RESIDUE GOL A 1

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

Asymmetric Unit (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_028966	I	596	T	CAN13_HUMAN	Polymorphism	2276568	A	I	596	T

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_028966	I	596	T	CAN13_HUMAN	Polymorphism	2276568	A	I	596	T

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (0, 0)

Exons (10, 10)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:157
 aligned with CAN13_HUMAN | Q6MZZ7 from UniProtKB/Swiss-Prot  Length:669

    Alignment length:257
                                   422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       
          CAN13_HUMAN   413 AGSQRFREKFPPVFFSSFRNTVQSSNNKFRRNFTMTYHLSPGNYVVVAQTRRKSAEFLLRIFLKMPDSDRHLSSHFNLRMKGSPSEHGSQQSIFNRYAQQRLDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQTSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLEAMAKTFRNLSKDGKGLYLTEMEWMSLVMYN 669
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..------------------------------------...----------------------------------------------..-------------.eehhhhhhhhhhhhh-----...hhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhhhhh.....ee..hhhhhhhhhhhhh....hhhhhhhhhhhhh....eehhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.14Exon 1.15a  PDB: A:509-511 UniProt: 417-482 [INCOMPLETE]          -----------Exon 1.17a         Exon 1.18           -------------------Exon 1.20b             Exon 1.21  PDB: A:575-600 ------------------------------------------Exon 1.23          1.24     Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.16   --------------------------------------Exon 1.19a          ------------------------------------------------Exon 1.22a  PDB: A:600-643 UniProt: 600-643 -------------------------- Transcript 1 (2)
                 2i7a A 507 SG------------------------------------LVP----------------------------------------------GS-------------DIDATQLQGLLNQELL-----DMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQTSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLEAMAKTFRNLSKDGKGLYLTEMEWMSLVMYN 669
                             |       -         -         -       510|        -         -         -         -       ||-         -  |    522       | -   |   542       552       562       572       582       592       602       612       622       632       642       652       662       
                             |                                  509 |                                            513|           515            530   536                                                                                                                                     
                           508                                    511                                             514

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

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	Sites
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	Cis Peptide Bonds
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