2I79 - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF THE ACETYLTRANSFERASE OF GNAT FAMILY FROM STREPTOCOCCUS PNEUMONIAE

Authors :   R. G. Zhang, M. Zhou, J. Abdullah, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)

Date :   30 Aug 06 (Deposition) - 10 Oct 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,E  (1x)
Biol. Unit 2: B,C  (1x)
Biol. Unit 3: D,F  (1x)

Keywords :   Acetyltransferase, Gnat Family, Acetyl Coenzyme *A, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. G. Zhang, M. Zhou, J. Abdullah, A. Joachimiak
The Crystal Structure Of The Acetyltransferase Of Gnat Family From Streptococcus Pneumoniae
To Be Published
PubMed: search

Molecule 1 - ACETYLTRANSFERASE, GNAT FAMILY
	Chains	:	A, B, C, D, E, F
	EC Number	:	2.3.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PDM68
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	170187
	Strain	:	TIGR4

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A				E
Biological Unit 2 (1x)	:		B	C
Biological Unit 3 (1x)	:				D		F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 6)

No.	Name	Count	Type	Full Name
1	ACO	6	Ligand/Ion	ACETYL COENZYME *A

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	ACO	2	Ligand/Ion	ACETYL COENZYME *A

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	ACO	2	Ligand/Ion	ACETYL COENZYME *A

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	ACO	2	Ligand/Ion	ACETYL COENZYME *A

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE B:31 , THR B:32 , LEU B:90 , PHE B:91 , ILE B:92 , VAL B:93 , ILE B:94 , TRP B:99 , ASN B:100 , ASN B:101 , GLY B:102 , GLY B:104 , SER B:105 , LEU B:126 , ASN B:132 , GLN B:133 , HIS B:137 , TYR B:139 , LYS B:141 , HOH B:421 , HOH B:422 , HOH B:426 , HOH B:449 , ASN D:100 , ACO D:404	BINDING SITE FOR RESIDUE ACO B 401
2	AC2	SOFTWARE	PHE A:31 , THR A:32 , LEU A:90 , PHE A:91 , ILE A:92 , VAL A:93 , ILE A:94 , TRP A:99 , ASN A:100 , ASN A:101 , GLY A:102 , LEU A:103 , GLY A:104 , SER A:105 , LEU A:126 , ASN A:132 , GLN A:133 , ALA A:134 , HIS A:137 , TYR A:139 , LYS A:141 , HOH A:406 , HOH A:412 , HOH A:430	BINDING SITE FOR RESIDUE ACO A 402
3	AC3	SOFTWARE	PHE C:31 , THR C:32 , LEU C:90 , PHE C:91 , ILE C:92 , VAL C:93 , ILE C:94 , TRP C:99 , ASN C:100 , ASN C:101 , GLY C:102 , GLY C:104 , SER C:105 , ASN C:132 , GLN C:133 , ALA C:134 , HIS C:137 , LEU C:138 , TYR C:139 , HOH C:447	BINDING SITE FOR RESIDUE ACO C 403
4	AC4	SOFTWARE	GLN B:133 , ACO B:401 , PHE D:31 , PHE D:91 , ILE D:92 , VAL D:93 , ILE D:94 , TRP D:99 , ASN D:100 , ASN D:101 , GLY D:102 , LEU D:103 , GLY D:104 , SER D:105 , LEU D:126 , ASN D:132 , ALA D:134 , ALA D:135 , HIS D:137 , TYR D:139 , LYS D:141 , HOH D:441 , HOH D:446	BINDING SITE FOR RESIDUE ACO D 404
5	AC5	SOFTWARE	PHE E:31 , THR E:32 , LEU E:90 , PHE E:91 , ILE E:92 , VAL E:93 , ILE E:94 , TRP E:99 , ASN E:100 , ASN E:101 , GLY E:102 , LEU E:103 , GLY E:104 , SER E:105 , LEU E:126 , ASN E:132 , GLN E:133 , ALA E:134 , HIS E:137 , TYR E:139 , LYS E:141 , HOH E:417 , HOH E:419 , HOH E:447 , HOH E:456	BINDING SITE FOR RESIDUE ACO E 405
6	AC6	SOFTWARE	ILE D:146 , PHE F:31 , LEU F:90 , PHE F:91 , ILE F:92 , VAL F:93 , ILE F:94 , TRP F:99 , ASN F:100 , ASN F:101 , GLY F:102 , GLY F:104 , SER F:105 , ASN F:132 , GLN F:133 , ALA F:134 , HIS F:137 , TYR F:139 , LYS F:141 , HOH F:427 , HOH F:438	BINDING SITE FOR RESIDUE ACO F 406

(no "SS Bond" information available for 2I79)

(no "Cis Peptide Bond" information available for 2I79)

(no "SAP(SNP)/Variant" information available for 2I79)

(no "PROSITE Motif" information available for 2I79)

(no "Exon" information available for 2I79)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:171
 aligned with A0A0H2URR1_S | A0A0H2URR1 from UniProtKB/TrEMBL  Length:172

    Alignment length:171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 
         A0A0H2URR1_S     1 MEYELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLI 171
               SCOP domains d2i79a_ A: automated matches                                                                                                                                                SCOP domains
               CATH domains 2i79A00 A:1-171  [code=3.40.630.30, no name defined]                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...eeeeeee..eeeeeeeee.........eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i79 A   1 MEYELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLI 171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain B from PDB  Type:PROTEIN  Length:171
 aligned with A0A0H2URR1_S | A0A0H2URR1 from UniProtKB/TrEMBL  Length:172

    Alignment length:171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 
         A0A0H2URR1_S     1 MEYELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLI 171
               SCOP domains d2i79b_ B: automated matches                                                                                                                                                SCOP domains
               CATH domains 2i79B00 B:1-171  [code=3.40.630.30, no name defined]                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...eeeeeee..eeeeeeeee.........eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i79 B   1 MEYELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLI 171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain C from PDB  Type:PROTEIN  Length:171
 aligned with A0A0H2URR1_S | A0A0H2URR1 from UniProtKB/TrEMBL  Length:172

    Alignment length:171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 
         A0A0H2URR1_S     1 MEYELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLI 171
               SCOP domains d2i79c_ C: automated matches                                                                                                                                                SCOP domains
               CATH domains 2i79C00 C:1-171  [code=3.40.630.30, no name defined]                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...eeeeeee..eeeeeeeee.........eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i79 C   1 MEYELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLI 171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain D from PDB  Type:PROTEIN  Length:167
 aligned with A0A0H2URR1_S | A0A0H2URR1 from UniProtKB/TrEMBL  Length:172

    Alignment length:169
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         
         A0A0H2URR1_S     4 ELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLIG 172
               SCOP domains d2i79d_ D: automated matches                                                                                                                                              SCOP domains
               CATH domains 2i79D00 D:4-172  [code=3.40.630.30, no name defined]                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...eeeeeee..eeeeeeeee.........eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh..eeeeeeeeeee..--.eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i79 D   4 ELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIE--KFIDVYLMGKLIG 172
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153   |  |163         
                                                                                                                                                                                   157  |            
                                                                                                                                                                                      160

Chain E from PDB  Type:PROTEIN  Length:168
 aligned with A0A0H2URR1_S | A0A0H2URR1 from UniProtKB/TrEMBL  Length:172

    Alignment length:168
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163        
         A0A0H2URR1_S     4 ELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLI 171
               SCOP domains d2i79e_ E: automated matches                                                                                                                                             SCOP domains
               CATH domains 2i79E00 E:4-171  [code=3.40.630.30, no name defined]                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhh...eeeeeee..eeeeeeeee.........eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2i79 E   4 ELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLI 171
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163

Chain F from PDB  Type:PROTEIN  Length:168
 aligned with A0A0H2URR1_S | A0A0H2URR1 from UniProtKB/TrEMBL  Length:172

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
         A0A0H2URR1_S     3 YELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLIG 172
               SCOP domains d2i79f_ F: automated matches                                                                                                                                               SCOP domains
               CATH domains 2i79F00 F:3-172  [code=3.40.630.30, no name defined]                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...eeeeeee..eeeeeeeee.........eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeee..--.eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i79 F   3 YELLIREAEPKDAAELVAFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIE--KFIDVYLMGKLIG 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    |  162       172
                                                                                                                                                                                    157  |            
                                                                                                                                                                                       160

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: automated matches (63)

Protein domain: automated matches (63)

Streptococcus pneumoniae [TaxId: 170187] (1)

1a	d2i79a_	A:
1b	d2i79b_	B:
1c	d2i79c_	C:
1d	d2i79d_	D:
1e	d2i79e_	E:
1f	d2i79f_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aminopeptidase (284)

Homologous Superfamily: [code=3.40.630.30, no name defined] (126)

Streptococcus pneumoniae tigr4. Organism_taxid: 170187. Strain: tigr4. (2)

1a	2i79D00	D:4-172
1b	2i79E00	E:4-171
1c	2i79F00	F:3-172
1d	2i79A00	A:1-171
1e	2i79B00	B:1-171
1f	2i79C00	C:1-171

(no "Pfam Domain" information available for 2I79)

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(no "Gene Ontology" information available for 2I79)

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	2i79
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Ligands, Modified Residues, Ions (1, 6)

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