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(-) Description

Title :  STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION ATU0120 FROM AGROBACTERIUM TUMEFACIENS
 
Authors :  J. Osipiuk, X. Xu, J. Gu, A. Savchenko, A. Edwards, A. Joachimiak, Midwe For Structural Genomics (Mcsg)
Date :  28 Aug 06  (Deposition) - 26 Sep 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Apc5905, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, X. Xu, J. Gu, A. Savchenko, A. Edwards, A. Joachimiak
X-Ray Crystal Structure Of Hypothetical Protein Atu0120 Fro Agrobacterium Tumefaciens.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN ATU0120
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ATU0120
    Organism Scientific: AGROBACTERIUM TUMEFACIENS STR.
    Organism Taxid: 176299
    Strain: C58
    Synonym: AGR_C_189P

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2CL3Ligand/IonCHLORIDE ION
3MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:56 , HOH A:562 , ASP B:14 , HOH B:555 , HOH B:557 , HOH B:583BINDING SITE FOR RESIDUE CA A 501
2AC2SOFTWAREHOH A:570 , HOH A:577 , HOH A:747 , ASP B:22 , ASP B:26 , HOH B:646 , HOH B:706BINDING SITE FOR RESIDUE CA B 502
3AC3SOFTWAREHOH A:661 , LEU B:136 , HOH B:592 , HOH B:593 , HOH B:640BINDING SITE FOR RESIDUE CA B 503
4AC4SOFTWARETYR A:140 , HOH A:599 , LEU B:139 , TYR B:140 , HOH B:593BINDING SITE FOR RESIDUE CL B 504
5AC5SOFTWAREPHE A:157 , PRO A:158 , HIS A:159 , TYR A:175 , HOH A:679BINDING SITE FOR RESIDUE CL A 505
6AC6SOFTWAREPHE B:157 , PRO B:158 , HIS B:159BINDING SITE FOR RESIDUE CL B 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2I6H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2I6H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2I6H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2I6H)

(-) Exons   (0, 0)

(no "Exon" information available for 2I6H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:179
 aligned with A9CKP1_AGRFC | A9CKP1 from UniProtKB/TrEMBL  Length:183

    Alignment length:179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
         A9CKP1_AGRFC     1 MKNDTAALAADIVDFWKKAGPDKWFDKDAAFDNHFHDRFRDAHFAAARRELDGWLEGAESSLALMLLLDQFPRNCFRGTAHMYATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSHAEDIAAQQRACDLNQPLGGLYLHHAEEHRDIVERFGRFPHRNGILLRETTPEERQYLEEG 179
               SCOP domains d2i6ha1 A:1-179 Hypothetical protein Atu0120                                                                                                                                        SCOP domains
               CATH domains -2i6hA01 A:2-83 TPR-like                                                           2i6hA02 A:84-179  [code=1.25.40.10, no name defined]                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i6h A   1 mKNDTAALAADIVDFWKKAGPDKWFDKDAAFDNHFHDRFRDAHFAAARRELDGWLEGAESSLALmLLLDQFPRNCFRGTAHmYATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSHAEDIAAQQRACDLNQPLGGLYLHHAEEHRDIVERFGRFPHRNGILLRETTPEERQYLEEG 179
                            |       10        20        30        40        50        60    |   70        80 |      90       100       110       120       130       140       150       160       170         
                            |                                                              65-MSE           82-MSE                                                                                             
                            1-MSE                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:176
 aligned with A9CKP1_AGRFC | A9CKP1 from UniProtKB/TrEMBL  Length:183

    Alignment length:176
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173      
         A9CKP1_AGRFC     4 DTAALAADIVDFWKKAGPDKWFDKDAAFDNHFHDRFRDAHFAAARRELDGWLEGAESSLALMLLLDQFPRNCFRGTAHMYATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSHAEDIAAQQRACDLNQPLGGLYLHHAEEHRDIVERFGRFPHRNGILLRETTPEERQYLEEG 179
               SCOP domains d2i6hb_ B: Hypothetical protein Atu0120                                                                                                                                          SCOP domains
               CATH domains 2i6hB01 B:4-83 TPR-like                                                         2i6hB02 B:84-179  [code=1.25.40.10, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhh.......hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i6h B   4 DTAALAADIVDFWKKAGPDKWFDKDAAFDNHFHDRFRDAHFAAARRELDGWLEGAESSLALmLLLDQFPRNCFRGTAHmYATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSHAEDIAAQQRACDLNQPLGGLYLHHAEEHRDIVERFGRFPHRNGILLRETTPEERQYLEEG 179
                                    13        23        33        43        53        63 |      73        83        93       103       113       123       133       143       153       163       173      
                                                                                        65-MSE           82-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2I6H)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2I6H)

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