2I3K - JenaLib

Molecule 1 - ORYCTOLAGUS CUNICULUS (RABBIT) D-AMINO-ACID OXIDASE (DAMOX) (DAO) (DAAO).
	Chains	:	_
	Class	:	STANDARD. CREATED: AUG 1, 1991.
	EC Number	:	EC No.1.4.3.3.
	Fragment	:	RABBIT D-AMINO ACID OXIDASE
	Mutation	:	YES
	Organism Common	:	RABBIT
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Other Details	:	[FUNCTION] COULD ACT AS A DETOXIFYING AGENT WHICH REMOVES D-AMINO ACIDS ACCUMULATED DURING AGING. ACTS ON A VARIETY OF D-AMINO ACIDS WITH A PREFERENCE FOR THOSE HAVING SMALL HYDROPHOBIC SIDE CHAINS FOLLOWED BY THOSE BEARING POLAR, AROMATIC, AND BASIC GROUPS. DOES NOT ACT ON ACIDIC AMINO ACIDS. [CATALYTIC ACTIVITY] A D- AMINO ACID + H(2)O + O(2) = A 2-OXO ACID + NH(3) + H(2)O(2). [COFACTOR] FAD. [SUBUNIT] HOMODIMER (BY SIMILARITY). [SUBCELLULAR LOCATION] PEROXISOME. [SIMILARITY] BELONGS TO THE DAMOX/DASOX FAMILY.
	Prosite	:	PS00677
	Sequence Updated	:	AUG 1, 1991. ANNOTATION
	Strain	:	LOCUS P22942 347 AA LINEAR MAM 27-JUN-2006 DEFINITION D-AMINO-ACID OXIDASE (DAMOX) (DAO) (DAAO). ACCESSION P22942 VERSION P22942 GI:129306 DBSOURCE SWISSPROT: LOCUS OXDA_RABIT, ACCESSION P22942

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Theoretical Model

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain _ from PDB  Type:PROTEIN  Length:337
 aligned with OXDA_RABIT | P22942 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:337
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       
           OXDA_RABIT     1 MRVVVIGAGVIGLSTALCIHELYHSALQPLDMTIYADRFTPLTNTDVAAGLWQPYLSDPSNPQEADWSRQTFNHLLSHIHSPSAEKMGLALISGYNLFRKAVPDPSWKDTVLGFRKLTLRELDMFPGYSYGWFNTSLILDGRSYLQWLTKRLTERGVKLFQRKVESFDEVAGGGVDVIVNCTGVWASALQPDPLLQPGRGQIIKVDAPWVKHFIITHDPESGIYKSPYIIPGVHAVTLGGIFQMGNWSEGNSTDDHNTIWKGCCSLEPTLKDARIVGEWTGFRPVRPQIRLGREQLSAGPSKTEVIHNYGHGGYGLTIHWGCALEAAKLFGKILEEK 337
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhh......eeeeee..hhhhhhhhhh.............hhhhhhhhhhhhhhhh......hhhh.eeeeeeeeee.............eeeee.hhhhhh......eeeeeeeeeehhhhhhhhhhhhhhhh..eeee....hhhhhhhh...eeee.hhhhhhhhh.....eeeeeeeeeee......eeeeehhhhh.....eeee....eeee...ee.......hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee....eeeeeee......eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: -        -------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i3k _   1 MRVVVIGAGVIGLSTALCIHELYHSALQPLDMTIYADRFTPLTNTDVAAGLWQPYLSDPSNPQEADWSRQTFNHLLSHIHSPSAEKMGLALISGYNLFRKAVPDPSWKDTVLGFRKLTLRELDMFPGYSYGWFNTSLILDGRSYLQWLTKRLTERGVKLFQRKVESFDEVAGGGVDVIVNCTGVWASALQPDPLLQPGRGQIIKVDAPWVKHFIITHDPESGIYKSPYIIPGVHAVTLGGIFQMGNWSEGNSTDDHNTIWKGCCSLEPTLKDARIVGEWTGFRPVRPQIRLGREQLSAGPSKTEVIHNYGHGGYGLTIHWGCALEAAKLFGKILEEK 337
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Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Theoretical Model(hide GO term definitions)

Chain (OXDA_RABIT | P22942)

molecular function
	GO:0003884	D-amino-acid oxidase activity	Catalysis of the reaction: a D-amino acid + H2O + O2 = a 2-oxo acid + NH3 + hydrogen peroxide.
	GO:0071949	FAD binding	Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0046416	D-amino acid metabolic process	The chemical reactions and pathways involving D-amino acids, the D-enantiomers of amino acids.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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	2i3k
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
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		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	OXDA_RABIT \| P22942
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	ECNo.1.4.3.3.
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Description

Compounds