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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN ATU1540 FROM AGROBACTERIUM TUMEFACIENS
 
Authors :  C. Chang, X. Xu, A. Savchenko, A. M. Edwards, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg)
Date :  01 Aug 06  (Deposition) - 29 Aug 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F  (2x)
Biol. Unit 3:  A (2x),B (2x),C (2x),D (2x),E (2x),F (2x)
Keywords :  Agrobacterium Tumefaciens, Hypothetical Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, X. Xu, A. Savchenko, A. M. Edwards, A. Joachimiak
Crystal Structure Of Protein Atu1540 From Agrobacterium Tumefaciens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN ATU1540
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET DERIVATIVES
    Expression System Strain: BL21 DERIVATIVES
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: AGROBACTERIUM TUMEFACIENS STR. C58
    Organism Taxid: 176299
    Strain: C58 / ATCC 33970
    Synonym: AGR_C_2837P

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCD  
Biological Unit 2 (2x):     EF
Biological Unit 3 (2x): A (2x)B (2x)C (2x)D (2x)E (2x)F (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric Unit (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1MSE-1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2HWJ)

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:201 -D:201
2B:201 -C:201
3F:201 -F:201

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:48 -Gly A:49
2Asp C:46 -Phe C:47
3Thr D:39 -Arg D:40
4Pro E:7 -Arg E:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2HWJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2HWJ)

(-) Exons   (0, 0)

(no "Exon" information available for 2HWJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
 aligned with A9CIY5_AGRFC | A9CIY5 from UniProtKB/TrEMBL  Length:205

    Alignment length:201
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203 
         A9CIY5_AGRFC     4 IYEPRLSRIAIDKLRPTQIAVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVMDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRMAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAMKLAKSREARHLPGWCGVE 204
               SCOP domains d2hwja1 A:4-204 Hypothetical protein      Atu1540                                                                                                                                                         SCOP domains
               CATH domains 2hwjA01 A:4-134 Conserved hypothetica     l protein from pyrococcus furiosus pfu- 392566-001, ParB domain                          2hwjA02 A:135-195                                            --------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.hhh.....eehhhhhhhhhhhhhh..-----......eeeeee.....eee..hhhhhhhhhhh...eeeeeeeee....hhhhhhhhhhhh.............hhhhh..hhhhheehhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hwj A   4 IYEPRLSRIAIDKLRPTQIAVGFREVELKRKEWRETR-----DFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVmDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRmAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAmKLAKSREARHLPGWCGVE 204
                                    13        23        33      |  -  |     53        63        73        83        93       103       113       123       133       143 |     153       163       173       183  |    193       203 
                                                               40    46                                                      103-MSE                                   145-MSE                                  186-MSE              


Chain B from PDB  Type:PROTEIN  Length:189
 aligned with A9CIY5_AGRFC | A9CIY5 from UniProtKB/TrEMBL  Length:205

    Alignment length:198
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196        
         A9CIY5_AGRFC     7 PRLSRIAIDKLRPTQIAVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVMDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRMAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAMKLAKSREARHLPGWCGVE 204
               SCOP domains d2hwjb_ B: automated matches                                                                                                                                                                           SCOP domains
               CATH domains 2hwjB01 B:7-134 Conserved hypothe         tical protein from pyrococcus furiosus pfu- 392566-001, ParB domain                   2hwjB02 B:135-195                                            --------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.hhh.....eehhhhhhhhhhhhhhh---------.....eeee.....eee..hhhhhhhhhhh...eeeeeeeee....hhhhhhhhhhhh.............hhhhh..hhhhheehhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2hwj B   7 PRLSRIAIDKLRPTQIAVGFREVELKRKEWRET---------GNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVmDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRmAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAmKLAKSREARHLPGWCGVE 204
                                    16        26        36  |      -  |     56        66        76        86        96      |106       116       126       136       146       156       166       176       186       196        
                                                           39        49                                                   103-MSE                                   145-MSE                                  186-MSE              


Chain C from PDB  Type:PROTEIN  Length:195
 aligned with A9CIY5_AGRFC | A9CIY5 from UniProtKB/TrEMBL  Length:205

    Alignment length:200
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204
         A9CIY5_AGRFC     5 YEPRLSRIAIDKLRPTQIAVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVMDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRMAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAMKLAKSREARHLPGWCGVE 204
               SCOP domains d2hwjc_ C: automated matches                                                                                                                                                                             SCOP domains
               CATH domains 2hwjC01 C:5-134 Conserved hypothetic     al protein from pyrococcus furiosus pfu- 392566-001, ParB domain                         2hwjC02 C:135-195                                            --------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.hhh.....eehhhhhhhhhhhhhhh.-----......eeeeee.....eee..hhhhhhhhhhh...eeeeeeeee....hhhhhhhhhhhh.............hhhhh..hhhhheehhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hwj C   5 YEPRLSRIAIDKLRPTQIAVGFREVELKRKEWRETR-----DFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVmDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRmAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAmKLAKSREARHLPGWCGVE 204
                                    14        24        34     |   - |      54        64        74        84        94       104       114       124       134       144|      154       164       174       184 |     194       204
                                                              40    46                                                      103-MSE                                   145-MSE                                  186-MSE              


Chain D from PDB  Type:PROTEIN  Length:193
 aligned with A9CIY5_AGRFC | A9CIY5 from UniProtKB/TrEMBL  Length:205

    Alignment length:199
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195         
         A9CIY5_AGRFC     6 EPRLSRIAIDKLRPTQIAVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVMDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRMAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAMKLAKSREARHLPGWCGVE 204
               SCOP domains d2hwjd_ D: automated matches                                                                                                                                                                            SCOP domains
               CATH domains 2hwjD01 D:6-134 Conserved hypotheti      cal protein from pyrococcus furiosus pfu- 392566-001, ParB domain                       2hwjD02 D:135-195                                            --------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.........eehhhhhhhhhhhhh...------.....eeeeee.....eee..hhhhhhhhhh....eeeeeeeee....hhhhhhhhhhhh.............hhhhh..hhhhheehhhhhhhhhhhhh.........hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hwj D   6 EPRLSRIAIDKLRPTQIAVGFREVELKRKEWRETR------FLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVmDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRmAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAmKLAKSREARHLPGWCGVE 204
                                    15        25        35    |    - |      55        65        75        85        95       105       115       125       135       145       155       165       175       185|      195         
                                                             40     47                                                     103-MSE                                   145-MSE                                  186-MSE              


Chain E from PDB  Type:PROTEIN  Length:188
 aligned with A9CIY5_AGRFC | A9CIY5 from UniProtKB/TrEMBL  Length:205

    Alignment length:198
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196        
         A9CIY5_AGRFC     7 PRLSRIAIDKLRPTQIAVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVMDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRMAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAMKLAKSREARHLPGWCGVE 204
               SCOP domains d2hwje_ E: automated matches                                                                                                                                                                           SCOP domains
               CATH domains 2hwjE01 E:7-134 Conserved hypothe          tical protein from pyrococcus furiosus pfu- 392566-001, ParB domain                  2hwjE02 E:135-195                                            --------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee.hhh.....eehhhhhhhhhhhhhh.----------..eeeeee.....eee..hhhhhhhhhhh...eeeeeeeee....hhhhhhhhhhhhh............hhhhh..hhhhheehhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2hwj E   7 PRLSRIAIDKLRPTQIAVGFREVELKRKEWRET----------NHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVmDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRmAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAmKLAKSREARHLPGWCGVE 204
                                    16        26        36  |      -   |    56        66        76        86        96      |106       116       126       136       146       156       166       176       186       196        
                                                           39         50                                                  103-MSE                                   145-MSE                                  186-MSE              


Chain F from PDB  Type:PROTEIN  Length:190
 aligned with A9CIY5_AGRFC | A9CIY5 from UniProtKB/TrEMBL  Length:205

    Alignment length:199
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195         
         A9CIY5_AGRFC     6 EPRLSRIAIDKLRPTQIAVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVMDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRMAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAMKLAKSREARHLPGWCGVE 204
               SCOP domains d2hwjf_ F: automated matches                                                                                                                                                                            SCOP domains
               CATH domains 2hwjF01 F:6-134 Conserved hypothet         ical protein from pyrococcus furiosus pfu- 392566-001, ParB domain                    2hwjF02 F:135-195                                            --------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...ee....eehhhhhhhhhhhhhh.---------...eeeeee.....eee..hhhhhhhhhhh...eeeeeeeee....hhhhhhhhhhhh.............hhhhh..hhhhheehhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hwj F   6 EPRLSRIAIDKLRPTQIAVGFREVELKRKEWRET---------GNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGKDEFWSVmDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALRmAGGYAKVIIPFSEFGWADFLRRRIDRDLLSDSFDDALAEAmKLAKSREARHLPGWCGVE 204
                                    15        25        35   |     -   |    55        65        75        85        95       105       115       125       135       145       155       165       175       185|      195         
                                                            39        49                                                   103-MSE                                   145-MSE                                  186-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HWJ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2HWJ)

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