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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRANSCRIPTIONAL ACTIVATOR OF COMK GENE FROM BACILLUS HALODURANS
 
Authors :  Q. S. Xu, Berkeley Structural Genomics Center (Bsgc)
Date :  18 Jul 06  (Deposition) - 29 May 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Berkeley Structure Genomics Center Target 1957B, Structural Genomics, Psi, Protein Structure Initiative, Berkeley Structural Genomics Center, Bsgc, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. S. Xu, I. Ankoudinova, Y. Lou, H. Yokota, R. Kim, S. H. Kim
Crystal Structure Of A Transcriptional Activator Of Comk Gene From Bacillus Halodurans.
Proteins V. 69 409 2007
PubMed-ID: 17636568  |  Reference-DOI: 10.1002/PROT.21292
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL ACTIVATOR OF COMK GENE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PLIC.B3
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: MED
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 86665

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2HQB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2HQB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2HQB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2HQB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2HQB)

(-) Exons   (0, 0)

(no "Exon" information available for 2HQB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
 aligned with Q9K8W3_BACHD | Q9K8W3 from UniProtKB/TrEMBL  Length:290

    Alignment length:287
                             1                                                                                                                                                                                                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       
         Q9K8W3_BACHD     - -MVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNESEAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDGYHVPVVEAIKDQGDFAIGYVGDQADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLESGNLYYDFQDGVVSLGEFSSVVPDEVREQITDAISTYIQTGQFPH 286
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2hqbA01 A:    0-103,A:223-253  [code=3.40.50.2300, no name defined]                                     2hqbA02 A:104-222,A:254-286  [code=3.40.50.2300, no name defined]                                                      2hqbA01 A:0-103,A:223-253      2hqbA02 A:104-222,A:254-286       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....----..hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh...eeee..hhhhhhhhh........eeeee........eeeeee.hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh....eee.....hhhhhhhhhhhhh.eeeeee..........eeeeeeehhhhhhhhhhhhh.......eeeeehhhhh.eee.......hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hqb A   0 GmVGLLVEDT----GWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYAmGYFGGmVAASmSETHKVGVIAAFPWQPEVEGFVDGAKYmNESEAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDGYHVPVVEAIKDQGDFAIGYVGDQADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLESGNLYYDFQDGVVSLGEFSSVVPDEVREQITDAISTYIQTGQFPH 286
                             |       9    |   19        29        39        49        59        69        79        89        99      |109  |    119       129       139     | 149       159       169       179       189       199       209       219       229       239       249       259       269       279       
                             |       9   14                                                                                         106-MSE |    |                         145-MSE                                                                                                                                         
                             1-MSE                                                                                                        112-MSE|                                                                                                                                                                         
                                                                                                                                               117-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2HQB)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HQB)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9K8W3_BACHD | Q9K8W3)
cellular component
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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