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(-) Description

Title :  STRUCTURE OF THE CYCLOPHILIN_CECYP16-LIKE DOMAIN OF THE SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 10 FROM HOMO SAPIENS
 
Authors :  J. R. Walker, T. Davis, R. Paramanathan, E. M. Newman, P. J. Finerty Jr. F. Mackenzie, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edward A. Bochkarev, S. Dhe-Paganon, Structural Genomics Consortium (S
Date :  18 Jul 06  (Deposition) - 01 Aug 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Folding, Peptidyl-Prolyl Cis-Trans Isomerase, Structural Genomics, Structural Genomics Consortium, Sgc, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. R. Walker, T. Davis, R. Paramanathan, E. M. Newman, P. J. Finerty Jr. , F. Mackenzie, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
Structure Of The Cyclophilin_cecyp16-Like Domain Of The Serologically Defined Colon Cancer Antigen 10
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 10
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET28-LIC
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentCYCLOPHILIN_CECYP16-LIKE DOMAIN (RESIDUES 8-173)
    GeneSDCCAG10
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2IOD2Ligand/IonIODIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:20 , ARG A:119 , HOH A:226BINDING SITE FOR RESIDUE IOD A 174
2AC2SOFTWAREARG A:56 , GLN A:64 , ALA A:102 , ASN A:103 , HIS A:127 , HOH A:230 , HOH A:234 , HOH A:280BINDING SITE FOR RESIDUE GOL A 176

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:44 -A:164

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2HQ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2HQ6)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CSA_PPIASE_2PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.CWC27_HUMAN19-166  1A:19-166
2CSA_PPIASE_1PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.CWC27_HUMAN49-66  1A:49-66

(-) Exons   (6, 6)

Asymmetric/Biological Unit (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003810701aENSE00001487414chr5:64064757-64065015259CWC27_HUMAN1-14141A:3-14 (gaps)14
1.3ENST000003810703ENSE00001487411chr5:64070518-6407061497CWC27_HUMAN15-47331A:15-4733
1.4ENST000003810704ENSE00001487410chr5:64077748-64077860113CWC27_HUMAN47-84381A:47-8438
1.5ENST000003810705ENSE00001487409chr5:64079663-64079806144CWC27_HUMAN85-132481A:85-13248
1.6ENST000003810706ENSE00001008348chr5:64081308-6408140699CWC27_HUMAN133-165331A:133-16533
1.7ENST000003810707ENSE00001008352chr5:64082351-64082454104CWC27_HUMAN166-200351A:166-1727
1.8ENST000003810708ENSE00001008354chr5:64084778-6408484770CWC27_HUMAN200-223240--
1.9bENST000003810709bENSE00001008355chr5:64096075-6409615480CWC27_HUMAN224-250270--
1.10ENST0000038107010ENSE00001149232chr5:64097129-6409715931CWC27_HUMAN250-260110--
1.11aENST0000038107011aENSE00001149201chr5:64100056-64100213158CWC27_HUMAN261-313530--
1.13ENST0000038107013ENSE00001082364chr5:64181270-64181373104CWC27_HUMAN313-348360--
1.14ENST0000038107014ENSE00001082362chr5:64267530-64267639110CWC27_HUMAN348-384370--
1.15ENST0000038107015ENSE00001082363chr5:64272962-64273065104CWC27_HUMAN385-419350--
1.16ENST0000038107016ENSE00001850478chr5:64313986-64314396411CWC27_HUMAN419-472540--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:170
 aligned with CWC27_HUMAN | Q6UX04 from UniProtKB/Swiss-Prot  Length:472

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
          CWC27_HUMAN     1 MSNIYIQEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLFNPFD 172
               SCOP domains d2  hq6a_ A: automated matches                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..--.........eeeeee..eeeeeee....hhhhhhhhhhhhhh.....ee..eee...eeee................................eeee...........eeee...hhhhh....eeeee...hhhhhhhh...............eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------CSA_PPIASE_2  PDB: A:19-166 UniProt: 19-166                                                                                                         ------ PROSITE (1)
                PROSITE (2) ------------------------------------------------CSA_PPIASE_1      ---------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1a     Exon 1.3  PDB: A:15-47           -------------------------------------Exon 1.5  PDB: A:85-132 UniProt: 85-132         Exon 1.6  PDB: A:133-165         1.7     Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.4  PDB: A:47-84 UniProt: 47-84 ---------------------------------------------------------------------------------------- Transcript 1 (2)
                 2hq6 A   3 VP--RGSEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLFNPFD 172
                             |  |   10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
                             4  5                                                                                                                                                                       

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2HQ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HQ6)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CWC27_HUMAN | Q6UX04)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0000398    mRNA splicing, via spliceosome    The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
    GO:0071013    catalytic step 2 spliceosome    A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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        CWC27_HUMAN | Q6UX044r3e

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