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(-) Description

Title :  CRYSTAL STRUCTURE OF ORF 1438 A PUTATIVE GLUCOSE/RIBITOL DEHYDROGENASE FROM CLOSTRIDIUM THERMOCELLUM
 
Authors :  Southeast Collaboratory For Structural Genomics (Secsg), Y. Li, N. Shaw, H. Xu, C. Cheng, L. Chen, Z. J. Liu, J. P. Rose, B. C. Wang
Date :  18 Jul 06  (Deposition) - 12 Sep 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Glucose/Ribitol Dehydrogenase, Cth-1438, Structural Genomics, Southeast Collaboratory For Structural Genomics, Secsg, Psi, Protein Structure Initiative, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Li, N. Shaw, H. Xu, C. Cheng, L. Chen, Z. J. Liu, J. P. Rose, B. C. Wang, Southeast Collaboratory For Structural Genomics
Crystal Structure Of Orf 1438 A Putative Glucose/ Ribitol Dehydrogenase From Clostridium Thermocellum
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUCOSE/RIBITOL DEHYDROGENASE
    ChainsA
    EC Number1.1.1.62
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Cell LineBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypeBACTERIAL
    Organism ScientificCLOSTRIDIUM THERMOCELLUM
    Organism Taxid1515

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (4x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:221
 aligned with A3DDY9_CLOTH | A3DDY9 from UniProtKB/TrEMBL  Length:247

    Alignment length:245
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240     
         A3DDY9_CLOTH     1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPEEVANVVGFLASDDSNYITGQVINIDGGL 245
               SCOP domains d2hq1a_ A: automated matches                                                                                                                                                                                                                          SCOP domains
               CATH domains 2hq1A00 A:1-245 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....................eeeeee....hhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeeee.---------------............................eeeeee..---------hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.............................hhhhhhhhhhhhhhhhhh.....eeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hq1 A   1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNA---------------WDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITS---------QANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPEEVANVVGFLASDDSNYITGQVINIDGGL 245
                                    10        20        30        40        50        60        70        80        90|        -      |110       120       130       140 |       - |     160       170       180       190       200       210       220       230       240     
                                                                                                                     91             107                                142       152                                                                                             

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (A3DDY9_CLOTH | A3DDY9)
molecular function
    GO:0004316    3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity    Catalysis of the reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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