2HLS - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF A PROTEIN DISULFIDE OXIDOREDUCTASE FROM AEROPYRUM PERNIX K1

Authors :   K. D'Ambrosio, G. De Simone

Date :   10 Jul 06 (Deposition) - 03 Oct 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.93

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (4x)

Keywords :   Protein Disulfide Oxidoreductase, Thioredoxin Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. D'Ambrosio, E. Pedone, E. Langella, G. De Simone, M. Rossi, C. Pedone, S. Bartolucci
A Novel Member Of The Protein Disulfide Oxidoreductase Family From Aeropyrum Pernix K1: Structure, Function And Electrostatics.
J. Mol. Biol. V. 362 743 2006
PubMed-ID: 16934838 | Reference-DOI: 10.1016/J.JMB.2006.07.038

Molecule 1 - PROTEIN DISULFIDE OXIDOREDUCTASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRC99A
	Expression System Strain	:	RB791
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	AEROPYRUM PERNIX
	Organism Taxid	:	272557
	Strain	:	K1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (4x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:36 , GLU A:73	BINDING SITE FOR RESIDUE CL A 800
2	AC2	SOFTWARE	LYS B:36 , ARG B:72 , GLU B:73	BINDING SITE FOR RESIDUE CL B 801

Asymmetric Unit

No.	Residues
1	A:39	-	A:42
2	A:150	-	A:153
3	B:39	-	B:42
4	B:150	-	B:153

Asymmetric Unit

No.	Residues
1	Val A:87	-	Pro A:88
2	Val A:197	-	Pro A:198
3	Val B:87	-	Pro B:88
4	Val B:197	-	Pro B:198

(no "SAP(SNP)/Variant" information available for 2HLS)

(no "PROSITE Motif" information available for 2HLS)

(no "Exon" information available for 2HLS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:232
 aligned with Q9YDZ4_AERPE | Q9YDZ4 from UniProtKB/TrEMBL  Length:243

    Alignment length:232
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  
         Q9YDZ4_AERPE     2 ARYYVLDLSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGGEVRWTGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAINGYLVFVGVPYEEDFLDYVKSAAEGRLTVKG 233
               SCOP domains d2hlsa1 A:2-123 automated matches                                                                                         d2hlsa2 A:124-233 automated matches                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhh.....eeeeeee......hhhhhhhhhhhhhhhh.ee..ee.eeeeeee...hhhhhhhh......eeee....eeee.....hhhhhhhhhhhhhhh.....hhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeee..eeeee...hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hls A   2 ARYYVLDLSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGGEVRWTGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAINGYLVFVGVPYEEDFLDYVKSAAEGRLTVKG 233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain B from PDB  Type:PROTEIN  Length:229
 aligned with Q9YDZ4_AERPE | Q9YDZ4 from UniProtKB/TrEMBL  Length:243

    Alignment length:229
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222         
         Q9YDZ4_AERPE     3 RYYVLDLSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGGEVRWTGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAINGYLVFVGVPYEEDFLDYVKSAAEGRLTV 231
               SCOP domains d2hlsb1 B:3-123 automated matches                                                                                        d2hlsb2 B:124-231 automated matches                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.....eeeeeee......hhhhhhhhhhhhhhhh........eeeeeee...hhhhhhhh......eeee....eeee.....hhhhhhhhhhhhhhh.....hhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhh.....eeee..eeeee...hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hls B   3 RYYVLDLSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGGEVRWTGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAINGYLVFVGVPYEEDFLDYVKSAAEGRLTV 231
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

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Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thioredoxin fold (994)

Superfamily: Thioredoxin-like (992)

Family: automated matches (347)

Protein domain: automated matches (347)

Aeropyrum pernix [TaxId: 272557] (1)

1a	d2hlsa1	A:2-123
1b	d2hlsa2	A:124-233
1c	d2hlsb1	B:3-123
1d	d2hlsb2	B:124-231

(no "CATH Domain" information available for 2HLS)

(no "Pfam Domain" information available for 2HLS)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2HLS)

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	Cis Peptide Bonds
		Val A:197 - Pro A:198	[ RasMol ]
		Val A:87 - Pro A:88	[ RasMol ]
		Val B:197 - Pro B:198	[ RasMol ]
		Val B:87 - Pro B:88	[ RasMol ]

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		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (4, 4)

Cis Peptide Bonds (4, 4)

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