2HJS - JenaLib

Title :   THE STRUCTURE OF A PROBABLE ASPARTATE-SEMIALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA

Authors :   M. E. Cuff, E. Evdokimova, M. Kudritska, A. Edwards, A. Savchenko, A. Jo Midwest Center For Structural Genomics (Mcsg)

Date :   30 Jun 06 (Deposition) - 29 Aug 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Aspartate-Semialdehyde Dehydrogenase, Probable Hydrolase, Pseudomonas Aeruginosa, Structurual Genomics, Midwest Center For Structural Genomics (Mcsg), Psi, Protein Structure Initiative, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. E. Cuff, E. Evdokimova, M. Kudritska, A. Edwards, A. Savchenko, A. Joachimiak
The Structure Of A Probable Aspartate-Semialdehyde Dehydrogenase From Pseudomonas Aeruginosa
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 12)

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:15 , SER A:161 , SER A:162 , HOH A:476 , HOH A:623	BINDING SITE FOR RESIDUE DIO A 401
02	AC2	SOFTWARE	VAL A:256	BINDING SITE FOR RESIDUE DIO A 402
03	AC3	SOFTWARE	GLU A:207 , LEU A:258 , VAL A:297 , DIO A:410 , HOH A:669	BINDING SITE FOR RESIDUE DIO A 403
04	AC4	SOFTWARE	GLY A:98 , ALA A:99 , GLU A:101	BINDING SITE FOR RESIDUE DIO A 404
05	AC5	SOFTWARE	HIS A:32 , ARG A:33 , LEU A:34 , ALA A:50 , SER A:52	BINDING SITE FOR RESIDUE DIO A 405
06	AC6	SOFTWARE	THR A:13 , GLU A:18 , GLN A:45 , ARG A:165 , HOH A:700	BINDING SITE FOR RESIDUE DIO A 406
07	AC7	SOFTWARE	GLY A:14 , SER A:15 , GLY A:164 , ARG A:165 , GLU A:166 , HOH A:444 , HOH A:504 , HOH A:676 , HOH A:699	BINDING SITE FOR RESIDUE DIO A 407
08	AC8	SOFTWARE	LYS A:269 , GLY A:270 , LYS A:318	BINDING SITE FOR RESIDUE DIO A 408
09	AC9	SOFTWARE	PHE A:242	BINDING SITE FOR RESIDUE DIO A 409
10	BC1	SOFTWARE	ASP A:205 , ALA A:206 , GLU A:276 , DIO A:403	BINDING SITE FOR RESIDUE DIO A 410

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:334
 aligned with USG_PSEAE | O87014 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:334
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332    
            USG_PSEAE     3 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELLIKHYL 336
               SCOP domains d2hjsa1 A:3-129,A:320-336 Usg-1 protein homolog PA3116                                                                         d2hjsa2 A:130-319 Usg-1 protein homolog PA3116                                                                                                                                                d2hjsa1           SCOP domains
               CATH domains 2hjsA01 A:3-130,A:315-336 NAD(P)-binding Rossmann-like Domain                                                                   2hjsA02 A:131-314 Dihydrodipicolinate Reductase; domain 2                                                                                                                               2hjsA01                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee...hhhhhhhhhhhhhh......eeeee.......eeee..eeee.ee.hhhhhhhh.eeee..hhhhhhhhhhhhhhh..eeee.............hhhhhhhhhhhh....eee..hhhhhhhhhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.............................hhhhhhhhhhhhhhhhhhh..eeeeeee......eeeeeeeee....hhhhhhhhhhhh..eee..................eeeeeeee......eeeeeeee......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hjs A   3 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRmGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVmVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELLIKHYL 336
                                    12        22        32        42    |   52        62        72        82        92       102      |112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332    
                                                                       47-MSE                                                       109-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (2, 2)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

Asymmetric Unit(hide GO term definitions)

Chain A (USG_PSEAE | O87014)

molecular function
	GO:0003942	N-acetyl-gamma-glutamyl-phosphate reductase activity	Catalysis of the reaction: N-acetyl-L-glutamate 5-semialdehyde + NADP+ + phosphate = N-acetyl-5-glutamyl phosphate + NADPH + H+.
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0004073	aspartate-semialdehyde dehydrogenase activity	Catalysis of the reaction: L-aspartate 4-semialdehyde + NADP(+) + phosphate = 4-phospho-L-aspartate + H(+) + NADPH.
	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
	GO:0046983	protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
biological process
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0009097	isoleucine biosynthetic process	The chemical reactions and pathways resulting in the formation of isoleucine, (2R,3R)-2-amino-3-methylpentanoic acid.
	GO:0009089	lysine biosynthetic process via diaminopimelate	The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
	GO:0009086	methionine biosynthetic process	The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0009088	threonine biosynthetic process	The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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