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(-) Description

Title :  NMR STRUCTURE OF BACILLUS SUBTILIS PROTEIN YQBF, NORTHEAST STRUCTURAL GENOMICS TARGET SR449
 
Authors :  K. Ding, T. A. Ramelot, J. R. Cort, D. Wang, H. Janjua, K. Cunningham, L. - C. Ma, R. Xiao, J. Liu, M. Baran, G. V. T. Swapna, T. B. Acton, B. Rost, G. T. Montelione, M. A. Kennedy, Northeast Structural Genomics Consortium (Nesg)
Date :  30 Jun 06  (Deposition) - 05 Jun 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Two-Domain, Nmr Structure, Bsu26130, Yqbf, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Cort, T. A. Ramelot, R. Xiao, G. V. T. Swapna, G. M. Montelione, M. A. Kennedy
Nmr Structure Of Bacillus Subtilis Protein Yqbf, Northeast Structural Genomics Target Sr449
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YQBF
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21 (LAMBDA DE3) PMGK
    Expression System Taxid: 562
    Expression System Vector: PLASMID
    Gene: YQBF
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2HJQ)

(-) Sites  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:111
 aligned with YQBF_BACSU | P45922 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:111
                                                                                                                                103        
                                    10        20        30        40        50        60        70        80        90       100  |      - 
           YQBF_BACSU     1 MFTAKLIKGKTYNVMGITFRAGVSQTVPKKLYEYLNENPYFILTQELNNQKDDPINYTESELKGMNKAEHESIISNLGRNPSDFKNADERIAYILKQIDNKGE--------   -
               SCOP domains d2hjqa2 A:1-49 Hypothetical protein YqbF         d2hjqa1 A:50-103 Hypothetical protein YqbF            -------- SCOP domains
               CATH domains 2hjqA01 A:1-46 PriA/YqbF domain               2hjqA02 A:47-99  [code=1.10.720.10, no name defined] ------------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....eeee..eeee...eeeehhhhhhhhhhh..eeeee............hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 2hjq A   1 MFTAKLIKGKTYNVMGITFRAGVSQTVPKKLYEYLNENPYFILTQELNNQKDDPINYTESELKGMNKAEHESIISNLGRNPSDFKNADERIAYILKQIDNKGELEHHHHHH 111
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

NMR Structure
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

NMR Structure
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HJQ)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (YQBF_BACSU | P45922)
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.

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