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(-) Description

Title :  SOLUTION NMR STRUCTURE OF THE YDFO PROTEIN FROM ESCHERICHIA COLI. NORTHEAST STRUCTURAL GENOMICS TARGET ER251.
 
Authors :  P. Rossi, J. R. Cort, C. K. Ho, H. Janjua, K. Cunningham, L. -C. Ma, R. Xiao, J. Liu, M. Baran, G. V. T. Swapna, T. B. Acton, B. Rost, M. A. Kennedy, G. T. Montelione, Northeast Structural Genomics Consortium (Nesg)
Date :  28 Jun 06  (Deposition) - 22 Aug 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Er251, Nmr Structure, Autostructure, Nesg, Psi-2, Northeast Structural Genomics Consortium, Protein Structure Initiative, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Rossi, J. R. Cort, C. K. Ho, H. Janjua, K. Cunningham, L. -C. Ma, R. Xiao, J. Liu, M. Baran, G. V. T. Swapna, T. B. Acton, B. Rost, M. A. Kennedy, G. T. Montelione
Solution Nmr Structure Of The Ydfo Protein From Escherichia Coli. Northeast Structural Genomics Target Er251.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YDFO
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: ER251_21.4
    Expression System Strain: BL21(DE3)MGK
    Expression System Taxid: 562
    Expression System Vector Type: PET21
    Gene: YDFO
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: ESCHERICHIA COLI O6

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:127
 aligned with YDFO_ECOLI | P76156 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
           YDFO_ECOLI     2 DQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTESIQ 128
               SCOP domains d2hh8a1 A:7-133 Hypothetical protein YdfO                                                                                       SCOP domains
               CATH domains 2hh8A00 A:7-133 YdfO-like domain                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..eeeee....eeeee.....eeeee............hhhhhhhhhhhhhhh..hhhhhhhhhhhh...eeeee....eeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hh8 A   7 DQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTESIQ 133
                                    16        26        36        46        56        66        76        86        96       106       116       126
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

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NMR Structure(hide GO term definitions)
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