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Title :   CRYSTAL STRUCTURE OF THE PUTATIVE TETRAACYLDISACCHARIDE-1-P 4-KINASE FROM CHROMOBACTERIUM VIOLACEUM. NESG TARGET CVR39.

Authors :   S. M. Vorobiev, M. Abashidze, J. Seetharaman, C. X. Chen, M. Jiang, K. Cu L. C. Ma, R. Xiao, T. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northe Structural Genomics Consortium (Nesg)

Date :   22 Jun 06 (Deposition) - 22 Aug 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Tetraacyldisaccharide-1-P 4-Kinase, Lpxk, Lipid A Biosynthesis, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. M. Vorobiev, M Abashidze, J. Seetharaman, C. X. Chen, M. Jiang, K. Cunningham, L. C. Ma, R. Xiao, T. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum.
To Be Published
PubMed: search

Molecule 1 - TETRAACYLDISACCHARIDE-1-P 4-KINASE
	Chains	:	A, B
	EC Number	:	2.7.1.130
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21
	Expression System Strain	:	BL21(DE3)+ MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CV_3345
	Organism Scientific	:	CHROMOBACTERIUM VIOLACEUM
	Organism Taxid	:	243365
	Strain	:	ATCC 12472

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS B:11 , CYS B:14 , CYS B:29 , ASP B:32	BINDING SITE FOR RESIDUE ZN B 101
2	AC2	SOFTWARE	CYS A:11 , CYS A:14 , CYS A:29 , ASP A:32	BINDING SITE FOR RESIDUE ZN A 102

(no "SS Bond" information available for 2HF1)

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Asymmetric Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:61
 aligned with Y3345_CHRVO | Q7NSS5 from UniProtKB/Swiss-Prot  Length:60

    Alignment length:61
                                                                                     60  
                                    11        21        31        41        51        |- 
           Y3345_CHRVO    2 DAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEEEVK--  -
               SCOP domains d2hf1a1 A:2-60 Hypothetical protein CV3345                 -- SCOP domains
               CATH domains ------2hf1A01 A:8-62  [code=2.20.25.10, no name defined]      CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..........eee....eeee....eeeeee..ee..hhhhhee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                  2hf1 A  2 DAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPmmLESEARELAPEEEVKLE 62
                                    11        21        31        41  ||    51        61 
                                                                     44-MSE              
                                                                      45-MSE

Chain B from PDB  Type:PROTEIN  Length:59
 aligned with Y3345_CHRVO | Q7NSS5 from UniProtKB/Swiss-Prot  Length:60

    Alignment length:59
                                                                                   60  
                                    13        23        33        43        53      |  
           Y3345_CHRVO    4 KFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEEEVK--  -
               SCOP domains d2hf1b_ B: Hypothetical protein CV3345                      SCOP domains
               CATH domains ----2hf1B01 B:8-62  [code=2.20.25.10, no name defined]      CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..........eee....eeee....eeeeee..ee..hhhhhee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  2hf1 B  4 KFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPmmLESEARELAPEEEVKLE 62
                                    13        23        33        43||      53         
                                                                   44-MSE              
                                                                    45-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
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Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Class: All beta proteins (24004)

Fold: Trm112p-like (5)

Superfamily: Trm112p-like (5)

Family: Trm112p-like (3)

Protein domain: Hypothetical protein CV3345 (1)

Chromobacterium violaceum [TaxId: 536] (1)

1a	d2hf1a1	A:2-60
1b	d2hf1b_	B:

Asymmetric Unit

Classes(

)

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Class: Mainly Beta (13760)

Architecture: Single Sheet (341)

Topology: N-terminal domain of TfIIb (166)

Homologous Superfamily: [code=2.20.25.10, no name defined] (79)

Chromobacterium violaceum atcc 12472. Organism_taxid: 243365. Strain:atcc 12472. (1)

1a	2hf1A01	A:8-62
1b	2hf1B01	B:8-62

(no "Pfam Domain" information available for 2HF1)

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